NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214239_100322

Scaffold Ga0214239_100322


Overview

Basic Information
Taxon OID3300020688 Open in IMG/M
Scaffold IDGa0214239_100322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8479
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F080800Metagenome114N
F102438Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214239_1003221F080800GAGGMVDRSNLNPTERRQISEVKMAMVRAAQVNIKNIFPSLGAKSEKVHHTKSLSHTRKGSGRKHQ
Ga0214239_10032218F102438AGGAGMFDFEKPFKQYEELVERVKEVNEFWLQSTLSTIKEFFKIVKTK
Ga0214239_1003229F002539GAGGMRTPYIWTKAGTDITKRWRTQYGWVPPSELQEYKDKWKYYQNLPLRDLDADMREVYEMALQKAKVARIK

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