NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214194_100398

Scaffold Ga0214194_100398


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_100398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6636
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012455Metagenome / Metatranscriptome280Y
F052985Metagenome / Metatranscriptome141Y
F054522Metagenome / Metatranscriptome139Y
F074868Metagenome / Metatranscriptome119Y
F095359Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214194_1003981F074868AGGTGGMTTLTNIGLALNIPATLENRIIHDFNNGGCTSSYGLSTPQRIALLKILLGGNAPKCECIHCL
Ga0214194_10039810F052985AGGAGMAKHPPVNSAQWHSVFADDACKIWQDGNDDIFFKVAIKGQRVKYFYNETAHSDVSRYCADELGISYWSVLN
Ga0214194_10039814F054522GGAGMVITLQVPTKAQMGYGLGKCIQYGVEYNVLNDLQVELTSADEIKLTKMAVAFQGKLLDVKQTEYVAGDLPKFEVQYARTNRPIKTTRRA
Ga0214194_1003983F095359GGTGGMTIKIGGLGQTISAYCPVCSEKMTHMCIATLGTGRTVRYEWQCQPCELSLKSDSTGYAHLLTEMAYYV
Ga0214194_1003985F012455GGAGMNKVNRVQELRRSNAATPIRNKKKYTRKNKYKNKFDN
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