NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207939_1002684

Scaffold Ga0207939_1002684


Overview

Basic Information
Taxon OID3300020536 Open in IMG/M
Scaffold IDGa0207939_1002684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3755
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025029Metagenome / Metatranscriptome203Y
F028112Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0207939_10026841F028112AGGAMTWLPEWRITVGTNVYTNVTGVNVTTGRIDIDRQCQAGYARMDIINSTNALFDIDVTDSLTLELKDSGGTYVPVFGGTVSDFSTSVRSPEESGYVTLGTILAVGALAKLPKAIYTDSVAHNLDGEQIAIILEELLVNEWIEVAPALQWVNYDPTTTWANAENVGLGEIDTGLYQMDNLSAADRNTQTLVQQIADSALGTLYEDKQGRISYADADHRSNYLAANGSTQLDGNYASPASVKSILQIGKIRNSEIVRYGNDYGSTYSATDDASITAYGRYQRTFDSNIRFLADIEDIIERDLALRSVPRTQLDQITFRLDNPLMPNALRDDLINLFFGEPVVITNLPFNMFEGYFSGFVEGISMRATPTFVDATIYVSPTDFSLIAPTWATVIPTNTIWSGVNGTLQWSKAIGALT
Ga0207939_10026844F025029N/ARLSIRLGIAPQQLLDLDKTMLDALVQGLKDEAKEVSDASKRKGRR
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