NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207418_100423

Scaffold Ga0207418_100423


Overview

Basic Information
Taxon OID3300020483 Open in IMG/M
Scaffold IDGa0207418_100423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6875
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F073544Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0207418_10042310F000671GAGGMEKILCYCCNKTKNKLNVRKSILMPINLLMCETCIASKFEPRWVIILAGRQLGSEAVKEFIIKKRYAGNDIIASELLV
Ga0207418_10042311F073544AGGGGGVREYYEVIKIVFIHSERVYGSVESLGLYASKVRYQKDGIEIEEVLENDEFTVMDEIIFEHEEESN
Ga0207418_10042312F000473N/AVEFINKDKDHFKYGVNEWTGEPNKPVFYTAEMAKRIREIKKPDMGLQMDIVKYPQFLAIRLYEDNFLKYEGVKKEMVIDYVGKVKKVIESYGVRCELEGVPSARILRSN
Ga0207418_1004234F008814N/AMADQLTVLEEIIKEIGEELYQKWYNALAMEDRNEEASKAMSVNAGETAFWVVQTFMNKFNNAAEELKGE
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