NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10233770

Scaffold Ga0211731_10233770


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10233770 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3034
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_102337702F070116N/AMSKFRTWDSEILAEAVKVSLQIRAKIEEMCITTRTSPDGLPNSLIPTDNLYTLVCAYEAAYNALIENDLVKSGNLKTDKNIH
Ga0211731_102337703F099303AGGMNFIEFTYTKADGTESKRALLPLVGPTTFVEGIDVSQMPEDEFVTFCRDFSELKSTQHEQTMAMLAKFDLKHNYRRFIPEQMSDITTDYV
Ga0211731_102337704F078719AGGMEVIELYFLFALTTGITSCYLFLVPAIALARDIGVHNSFTENTWLSYLIYITITTITAPFSVLPIFIPSFAERFKTGLEKSVMENQI
Ga0211731_102337705F045760GGAGMASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHGNIRLAKLFKEFTGRASADLFSSNPKVQSVALAYRRDWDKVKVIEGKVNFSLGARAHDSKGNLIWK
Ga0211731_102337706F038245AGGAMKIYFGNANEDLFSDGLFVINDNQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALKEVQRVNEAVKEANRLTERAESTIKGYVYSSWNDEFEVDFDTE
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