| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10001949 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22780 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (32.35%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012177 | Metagenome | 283 | Y |
| F018355 | Metagenome / Metatranscriptome | 235 | N |
| F027056 | Metagenome / Metatranscriptome | 196 | N |
| F036975 | Metagenome / Metatranscriptome | 169 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1000194923 | F027056 | N/A | MIEVNGTEYPVRYSMKALKKFERKTKVNVFSLSDPSKLSADACAFLCFVGVECGCSFEGQEFDMDLMTFEDHITLEHVTQCFDALGEYSSEKKA |
| Ga0206125_1000194925 | F018355 | N/A | MKVTIQKACKLRGNNWKKGATPSVTSDFAAELKAKGYLDAPKKKTDSDNNELTEE |
| Ga0206125_1000194928 | F036975 | GGA | MAQGALEQKGGKVGFEGIGADIKPLMKQFEQLRKQVSDQNVQKRIHRAVGKIYKDEMLNNIVDARETIRIRRGGKGGFDIKAGTLRRSIKVWQIDKQHSTFWVGPRVGRKAPKDADAWFANIVEGDDQFIKGNNRNKGVFARSIANKRGEALTKMRKKYEFQIRKAAKAKGKKK |
| Ga0206125_100019494 | F012177 | N/A | MTDIERFWLDLMDARRYAITEVYGAECASRYKPHPMEREYFINNRGTFSAHPSVTEHTKAFWVMCETHYTTQREAYRTKLRANWHMVQQSTEYKNRKRERELLKDYISDAINGNGKETET |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |