NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10611009

Scaffold Ga0211735_10611009


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10611009 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1281
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008079Metagenome / Metatranscriptome339Y
F018483Metagenome / Metatranscriptome235N
F035568Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0211735_106110091F035568N/ATSLTNRQERVTATDSTMPILMDDDTDLWDKIREDMQYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKNDLKQLRDEN
Ga0211735_106110092F008079N/AMKIKDEFIGVKVSHKGNNVNVSTENYTFCESIGLGYMFEEPTVSEPKVIKYKAVKPPILEPEPVVEDTEDGTEAE
Ga0211735_106110094F018483AGGAMMCQAVEAYIYSKKGVAVKINRLAIISNARQMEMLAYAYAYANGDR
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