NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211735_10328559

Scaffold Ga0211735_10328559


Overview

Basic Information
Taxon OID3300020162 Open in IMG/M
Scaffold IDGa0211735_10328559 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)8 to 14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F033309Metagenome / Metatranscriptome177Y
F047018Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0211735_103285591F033309AGGAMTTRQKALSFLYAGLILLLGTVGGIETSPDLATGDGVYLGVFALVGIAFMALG
Ga0211735_103285594F047018AGGAGMLKLIGICFVVYLGWITGLIQTVLLVTAGLLTMIAGA
Ga0211735_103285595F000354N/ASFDINEACDHFDSTDQKAWKKIGKFIVADGQDYLNVLVEGFDYDQEDVGDGEYAAFEAGVKYALTKMNIAFEAAGVDLQVCEVDLVESMGFVMVRADDEPEDFVKRVLKKPVLMVESWID
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