NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1001745

Scaffold Ga0207193_1001745


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1001745 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38769
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (11.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010163Metagenome / Metatranscriptome307Y
F059360Metagenome / Metatranscriptome134Y
F064770Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100174516F059360N/AMTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA
Ga0207193_100174549F064770N/AMDFNLKTYKCFKIKHYLKEINFFFFFQGTSVDNESXVKIEQSFVNHELKYYRILNKLMINTLKSSVLKNVVVLIHGPIILLNNDNNNTKLTFKELENINPLITLLGFRLNNRIYSKKQIKNLRKMSYLENIYTFHKCMKTFTKLPYCKLKTKKTLSISK
Ga0207193_100174552F010163N/AMLLLKIAKNSFFSQNAITHSYIKHTSHTIKALDFIKEETFSYYVQXLLLFXFTNLSNLRIKTNYFISYMYFSFVNNQKLLSYVININLSLTNTLINVNDVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPVAVHFNNLFFKHQSYIFKKLKRKIFAKLVISYLYKAHNGCRLKKKKRIKIRTRTRKL
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