| Basic Information | |
|---|---|
| Taxon OID | 3300019783 Open in IMG/M |
| Scaffold ID | Ga0181361_100012 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9318 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.55%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F005775 | Metagenome | 390 | N |
| F008615 | Metagenome / Metatranscriptome | 330 | N |
| F011474 | Metagenome / Metatranscriptome | 290 | N |
| F016114 | Metagenome / Metatranscriptome | 249 | Y |
| F025444 | Metagenome | 201 | N |
| F026828 | Metagenome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181361_10001210 | F011474 | N/A | MKEKIDHLTHFDIVVKEELAICTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKTKELKDTRFPHLKIFS |
| Ga0181361_10001214 | F003659 | N/A | MTAADVIGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSFLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVVIAPNVLPSVDVFPAGGIKKYAIFGALGLLALLILK |
| Ga0181361_10001217 | F026828 | N/A | MITEELITSAIAFLAGWILKRPDFVQKIISKIFTKK |
| Ga0181361_10001219 | F008615 | N/A | MNTPDTFGAKMFNRFMRKGWHISFTCSYQDRVCVIPPERLDAQHLFGIYIPVMRHTWQPDLKREWYAALWSKKEKTMHGPTFEASAHPDDIERFAAFASWIGDLLRNPEKFT |
| Ga0181361_1000122 | F025444 | N/A | MYLQLAGLEPLDTALNPLAPGAPTYKYDAMYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFGKGKKTPSAVVKTPGMGVDPATLMLIAKGIYAGVQALSVVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQLSDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK |
| Ga0181361_10001220 | F016114 | N/A | MHTKYWAAAFFDSRDVETINEMAAMARRMLISQRELQRDELLRLKMKYPHLTTKD |
| Ga0181361_10001221 | F005775 | N/A | MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNAGKLDQVVTKELDTYTTHHLQNLLNTNEPR |
| Ga0181361_1000125 | F004838 | N/A | MITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLSGQIFSNAARHQNPSITNINENQFEVNEALLVETIAFYVLNAGGDTENFQRIYGSDTDIMFDLIIGNKRVMKDTPIFAAGSPFTFANTANFTAALGPNNLQFFAPRHQVFMEGAGILIPPQVQWSVQYTIFNVVSGAVVAPTASTQIGCYLFGTKVLLNFNTSI |
| Ga0181361_1000126 | F002287 | N/A | MASQPQKLAYVDGKLGAPTSGQQTTRILFNTIEAPGTTSTLVFFRNFQGLTSGQTNLTQNKLDSMESMIIKTISLYNYAPEGNLRNFGGAVQQTLSIIVGNQTVVKQLPIQFNQGTNGQAFDRLHENGGAEGQALGASDVLQNTLPCEIRLLTDIVIPPQVAFEVRIDSNSAAYTAAGAVTCVLSGYGKIFSAGNSF |
| Ga0181361_1000127 | F000710 | N/A | MISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSCTTSAAPQTITNGMQLRVSLTINNDVVIDDVVAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |