NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10005310

Scaffold Ga0190265_10005310


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10005310 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9084
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013143Metagenome / Metatranscriptome274Y
F051769Metagenome / Metatranscriptome143Y
F052442Metagenome / Metatranscriptome142Y
F095084Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0190265_1000531011F051769N/AMNAHAAPGRVVAAVVLAMAGLGLGLLLRGGRRAVPLPVVRCPIHGIAYDAELEVCPDCAKTDAAGRKGGAR
Ga0190265_1000531012F095084GGAGGMSGMPALYCRTCNTFREVEDWRERGEALVIALEPCGHEIRRRAGIEWPIHHVAA
Ga0190265_1000531013F013143AGGAGMLSRFVLGAIVGGIAVYMWGDEIRRFANTKSRTARLAAADTLKAVQSTAEEMFDSAKDQVASTLQSGQDAIRPARANRER
Ga0190265_100053106F052442AGGAGGMPRKSKTTEEPRIGRKDLQDPDRDVRSPRKGNVERDGERSDRDAGAGRPVQLDEEGRSRPADSDSPRPADDTSVPK
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