NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10040924

Scaffold Ga0169931_10040924


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10040924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5210
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F024039Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100409241F024039N/AKDTLRFENPGHADSWYKTKMREIRKQRTVDYFNNKYDLKLDDFDVADAFGIAHYSNRVLTER
Ga0169931_100409245F000369AGGAMEIELADHYDRMNKVVGELLKGNNPTQIATVTGFKRAEVLEYIDQWKEVVRNDSTARERAKEAVSGADQHYAMLIKEAWKTVEDADQSGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVIDAEQVSGS
Ga0169931_100409247F000376GGAMSIYQEKAKECKCCGKHVPLPTVLKEYDGIMLCPTTFANVIEYKRLWKSIGKRPMGSVRKHFSDYVQQLVETTIDKNDDGTLQ
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