| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10006544 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17539 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (71.05%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003688 | Metagenome / Metatranscriptome | 473 | Y |
| F006885 | Metagenome / Metatranscriptome | 362 | Y |
| F028423 | Metagenome / Metatranscriptome | 191 | Y |
| F070870 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_1000654418 | F028423 | AGTAGG | MNNLEKDELIQLVNFYKQKLSDAELNLLTLQLEINKLNSVVLGLSKEPAKKSK |
| Ga0169931_1000654419 | F006885 | AGG | MEYLLIVGLTLLASWSIIKISNKKRMMFLKKHKYRQSHIYEIVKDIAPRQLFDKPKVITQSQKHIQKNMLKVVITEGKAYFILDNVFYVADAIDGRVNEETTKPLDTENMPTKELDKMLSILDDLKQGVGPNDSGSAGNERV |
| Ga0169931_1000654426 | F003688 | AGGTGG | MYTDYMRKVVHSIPAPKNFGIQIIDNDHFLTVKLDEKKFLHMVHDEKMLALQYVVKIKKALEDCGAIVLVTREAIK |
| Ga0169931_1000654428 | F070870 | GGAG | MKKTKILVLIVLSFLTAISLWAASNFKKISDLDIFDIEED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |