NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182012_10504533

Scaffold Ga0182012_10504533


Overview

Basic Information
Taxon OID3300014499 Open in IMG/M
Scaffold IDGa0182012_10504533 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003261Metagenome / Metatranscriptome497Y
F103110Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0182012_105045331F103110GGCGGMKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL*
Ga0182012_105045332F003261N/ALIGADGPLMFVPASLVDANEKDDFATTARLVCIAHAATVCVMALEAWMKSATPGEKMDMTEPPSEAFDRQEVIVLMGESHSGQIQKFLPIIRSGNGKFFNLGETTVPGMDKMEGRFAQILPPKVADDQMRLLAQTMLKVKGVKTSKPGTTVRLPRSRR*
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