Metagenome / Metatranscriptome Family F103110

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103110
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	85 residues
Representative Sequence	MKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	44.55 %
% of genes near scaffold ends (potentially truncated)	35.64 %
% of genes from short scaffolds (< 2000 bps)	70.30 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.287 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (34.653 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.18% β-sheet: 15.18% Coil/Unstructured: 69.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00817	IMS	23.76
PF02586	SRAP	6.93
PF11799	IMS_C	6.93
PF13091	PLDc_2	2.97
PF02390	Methyltransf_4	1.98
PF00271	Helicase_C	1.98
PF11074	DUF2779	1.98
PF00072	Response_reg	0.99
PF13426	PAS_9	0.99
PF06865	Ppnp	0.99
PF00128	Alpha-amylase	0.99
PF13517	FG-GAP_3	0.99
PF03446	NAD_binding_2	0.99
PF04616	Glyco_hydro_43	0.99
PF03934	T2SSK	0.99
PF00406	ADK	0.99
PF14686	fn3_3	0.99
PF07690	MFS_1	0.99
PF07517	SecA_DEAD	0.99
PF11855	DUF3375	0.99
PF00176	SNF2-rel_dom	0.99
PF11858	DUF3378	0.99
PF07669	Eco57I	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	23.76
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	6.93
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	1.98
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	1.98
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.98
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.98
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.99
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	0.99
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.99
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG3123	Pyrimidine/purine nucleoside phosphorylase YaiE/PpnP, UPF0345/DUF1255 family	Nucleotide transport and metabolism [F]	0.99
COG3156	Type II secretory pathway, component PulK	Intracellular trafficking, secretion, and vesicular transport [U]	0.99
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	46.53 %
Unclassified	root	N/A	28.71 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	46.53 %
Unclassified	root	N/A	28.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	30.69 %
Unclassified	root	N/A	28.71 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	6.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.70 %
Unclassified	root	N/A	28.71 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	6.93 %
Verrucomicrobia bacterium ADurb.Bin006	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.70 %
Unclassified	root	N/A	28.71 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	4.95 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.99 %
Verrucomicrobia bacterium ADurb.Bin006	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.70 %
Unclassified	root	N/A	28.71 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	4.95 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.99 %
Verrucomicrobia bacterium ADurb.Bin006	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.70 %
Unclassified	root	N/A	28.71 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	4.95 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.99 %
Verrucomicrobia bacterium ADurb.Bin006	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002538\|JGI24132J36420_10159681	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300002569\|JGI24136J36422_10080524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	905	Open in IMG/M
3300004806\|Ga0007854_10035751	All Organisms → cellular organisms → Bacteria	2560	Open in IMG/M
3300004806\|Ga0007854_10056768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1911	Open in IMG/M
3300005947\|Ga0066794_10083804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	950	Open in IMG/M
3300006055\|Ga0097691_1125666	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300006111\|Ga0007848_1083055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	594	Open in IMG/M
3300006113\|Ga0007858_1017799	Not Available	1653	Open in IMG/M
3300006162\|Ga0075030_100089692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2515	Open in IMG/M
3300006162\|Ga0075030_100096988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2406	Open in IMG/M
3300006642\|Ga0075521_10458958	Not Available	623	Open in IMG/M
3300006795\|Ga0075520_1020026	All Organisms → cellular organisms → Bacteria	3349	Open in IMG/M
3300006949\|Ga0075528_10212886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300009502\|Ga0114951_10017180	All Organisms → cellular organisms → Bacteria	5092	Open in IMG/M
3300009502\|Ga0114951_10070884	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2041	Open in IMG/M
3300014167\|Ga0181528_10001394	All Organisms → cellular organisms → Bacteria	15131	Open in IMG/M
3300014167\|Ga0181528_10521172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300014169\|Ga0181531_10822343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300014201\|Ga0181537_10484046	Not Available	847	Open in IMG/M
3300014489\|Ga0182018_10587300	Not Available	585	Open in IMG/M
3300014490\|Ga0182010_10267092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	912	Open in IMG/M
3300014492\|Ga0182013_10441454	Not Available	689	Open in IMG/M
3300014493\|Ga0182016_10296602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	991	Open in IMG/M
3300014494\|Ga0182017_10855145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300014498\|Ga0182019_10824281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300014499\|Ga0182012_10077573	Not Available	2562	Open in IMG/M
3300014499\|Ga0182012_10504533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	786	Open in IMG/M
3300014501\|Ga0182024_10184585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2875	Open in IMG/M
3300014501\|Ga0182024_11526681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300014502\|Ga0182021_10147950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2733	Open in IMG/M
3300014502\|Ga0182021_13198061	Not Available	547	Open in IMG/M
3300014658\|Ga0181519_10920150	Not Available	542	Open in IMG/M
3300014838\|Ga0182030_10032938	All Organisms → cellular organisms → Bacteria	9026	Open in IMG/M
3300014839\|Ga0182027_10161891	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2627	Open in IMG/M
3300014839\|Ga0182027_10451026	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300014839\|Ga0182027_11754043	Not Available	602	Open in IMG/M
3300019270\|Ga0181512_1648195	Not Available	513	Open in IMG/M
3300020733\|Ga0214172_1000020	All Organisms → cellular organisms → Bacteria	100689	Open in IMG/M
3300022555\|Ga0212088_10087534	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300022555\|Ga0212088_10614499	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300023088\|Ga0224555_1190095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300023101\|Ga0224557_1078389	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300025162\|Ga0209083_1241964	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300025410\|Ga0208875_1009291	Not Available	1809	Open in IMG/M
3300025495\|Ga0207932_1013163	Not Available	2413	Open in IMG/M
3300025548\|Ga0208716_1085430	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300025650\|Ga0209385_1022445	Not Available	2531	Open in IMG/M
3300025716\|Ga0209746_1001156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	12877	Open in IMG/M
3300025716\|Ga0209746_1002845	All Organisms → cellular organisms → Bacteria	7940	Open in IMG/M
3300025829\|Ga0209484_10009108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1913	Open in IMG/M
3300025838\|Ga0208872_1034603	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300025854\|Ga0209176_10104790	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300025864\|Ga0209429_10071803	Not Available	1566	Open in IMG/M
3300025865\|Ga0209226_10140547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1084	Open in IMG/M
3300025888\|Ga0209540_10383450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300027898\|Ga0209067_10130443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1323	Open in IMG/M
3300027911\|Ga0209698_10020453	All Organisms → cellular organisms → Bacteria	6293	Open in IMG/M
3300027911\|Ga0209698_10128423	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300028779\|Ga0302266_10075013	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1434	Open in IMG/M
3300028779\|Ga0302266_10193146	Not Available	776	Open in IMG/M
3300028800\|Ga0265338_10369528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006	1027	Open in IMG/M
3300028859\|Ga0302265_1035984	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1772	Open in IMG/M
3300028866\|Ga0302278_10198218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1000	Open in IMG/M
3300028874\|Ga0302155_10031399	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2526	Open in IMG/M
3300028909\|Ga0302200_10153609	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300028909\|Ga0302200_10275591	Not Available	814	Open in IMG/M
3300028909\|Ga0302200_10352846	Not Available	693	Open in IMG/M
3300029883\|Ga0311327_10285357	Not Available	1081	Open in IMG/M
3300029908\|Ga0311341_10021292	All Organisms → cellular organisms → Bacteria	5881	Open in IMG/M
3300029911\|Ga0311361_10035517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8526	Open in IMG/M
3300029913\|Ga0311362_10297599	Not Available	1688	Open in IMG/M
3300029914\|Ga0311359_10566455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	847	Open in IMG/M
3300029914\|Ga0311359_10806892	Not Available	657	Open in IMG/M
3300029922\|Ga0311363_11267023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300029952\|Ga0311346_10206620	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300029952\|Ga0311346_10905047	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
3300029957\|Ga0265324_10024352	Not Available	2149	Open in IMG/M
3300029982\|Ga0302277_1106212	Not Available	1213	Open in IMG/M
3300030020\|Ga0311344_10468453	Not Available	1128	Open in IMG/M
3300030020\|Ga0311344_11113293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300030049\|Ga0302191_10042844	Not Available	2034	Open in IMG/M
3300030518\|Ga0302275_10351578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300030688\|Ga0311345_10606986	Not Available	906	Open in IMG/M
3300030688\|Ga0311345_11352831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300030838\|Ga0311335_10904634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300030943\|Ga0311366_11064440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300031232\|Ga0302323_101864840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300031232\|Ga0302323_103127920	Not Available	528	Open in IMG/M
3300031251\|Ga0265327_10322860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300031258\|Ga0302318_10719941	Not Available	501	Open in IMG/M
3300031524\|Ga0302320_11349594	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	715	Open in IMG/M
3300031708\|Ga0310686_101516041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	805	Open in IMG/M
3300031722\|Ga0311351_11445222	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300031726\|Ga0302321_101712945	Not Available	727	Open in IMG/M
3300031902\|Ga0302322_101215842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300031902\|Ga0302322_102521243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	634	Open in IMG/M
3300032562\|Ga0316226_1006369	All Organisms → cellular organisms → Bacteria	8589	Open in IMG/M
3300032677\|Ga0316227_1200578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	700	Open in IMG/M
3300033824\|Ga0334840_007696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4185	Open in IMG/M
3300034282\|Ga0370492_0005283	All Organisms → cellular organisms → Bacteria	5212	Open in IMG/M
3300034282\|Ga0370492_0087777	Not Available	1274	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.28%
Aquatic	Environmental → Aquatic	24.75%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	36.63%
Soil	Environmental → Terrestrial → Soil	35.64%
Freshwater	Environmental → Aquatic → Freshwater	19.80%
Sediment	Environmental → Aquatic → Sediment	4.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	36.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	8.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.94%
Lake	Environmental → Aquatic → Freshwater → Lake	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	36.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	16.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	15.84%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	5.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	24.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	15.84%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	8.91%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	7.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	5.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.95%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.95%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.97%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.98%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.98%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.99%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.99%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002538	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212	Environmental	Open in IMG/M
3300002569	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006111	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08	Environmental	Open in IMG/M
3300006113	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020733	Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025162	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes)	Environmental	Open in IMG/M
3300025410	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025548	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025716	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025838	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300025865	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24132J36420_101596812	3300002538	Arctic Peat Soil	MKLKNLIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFASRLQPASA*
JGI24136J36422_100805241	3300002569	Arctic Peat Soil	MKLKNLIPQRCRSQVVRQFGDAKLIRQPNGQHELVGGTDTDRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPR
Ga0007854_100357512	3300004806	Freshwater	MKLKNIIPQRYRSQVIRQFGAAKLIRQSNGQHELVGGSDADRAAAFEWSSLFAHEIVFTHFHRVDHARNRPRKPWFAPRLQPVCP*
Ga0007854_100567681	3300004806	Freshwater	MKLKNLIPQRYRRRLIRRFGQAELVRLPNGQYELLGGTEADRAAAFEWTTLFAHEIVFTHFHREHPVRSRPRVRWFPAGLQPAL*
Ga0066794_100838041	3300005947	Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHART
Ga0097691_11256662	3300006055	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFAPRLQPAL*
Ga0007848_10830552	3300006111	Freshwater	MKLKNIIPQRYRSQVIRQFGAAKLIRQSNGQHELVGGSDADRAAAFEWSSLFAHEIVFTHFHRVDHARNRPRKPWFAPR
Ga0007858_10177992	3300006113	Freshwater	MKLKNLIPQRYRRRLIRRFGQAELVRLPNGQYELLGGTEADRAAAFEWTTLFAHEIVFTHFHREHPVRSRPRARWFPAGLQPAL*
Ga0075030_1000896922	3300006162	Watersheds	MKLKNIIPQRYRSQIVRQFGNAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPACL*
Ga0075030_1000969885	3300006162	Watersheds	MKLKNIFPQRYRRQLIRQFGDASLIRLPNGQHELRGGSDADRAAAFEWTSLFSHEIVFTHFQRDAQTRCRTRRTGFVSRLQHAL*
Ga0075521_104589582	3300006642	Arctic Peat Soil	TADVLPRRVTWRGMKLKNLIPKRYRKLVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVCQ*
Ga0075520_10200264	3300006795	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFDDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPACP*
Ga0075528_102128862	3300006949	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDTDRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRFQPAL*
Ga0114951_100171806	3300009502	Freshwater	MKLKNLIPQRYRRRLIRRFGQAELVRLPNGQYELLGGTAADRAAAFEWTTLFAHEIVFTHFHREHPVRSRPRARWFPAGLQPAL*
Ga0114951_100708841	3300009502	Freshwater	MKLKNLIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRAEAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFASRLQPASA*
Ga0181528_100013942	3300014167	Bog	MKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL*
Ga0181528_105211722	3300014167	Bog	MKLKNIIPQRYRRQVVRQFGDAKLIRQPNGQHELVGGTDADRASAFEWSSLFAHEIVFTHFHREDHARNRPRKPWFAPRFQPVGP*
Ga0181531_108223431	3300014169	Bog	MKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHELVGGTDADRATAFEWSSLFAHEIVFTHFHREDQARSRPRKPWFAPRLQPAL*
Ga0181537_104840461	3300014201	Bog	MKLKNIIPQRQHKQLIRQFGQAKLVKLSNGQHELLGGSDNDRSAAFEWSSLFAHEIVFTHFHREPKTYCRSRKP
Ga0182018_105873001	3300014489	Palsa	YRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLKPICQ*
Ga0182010_102670921	3300014490	Fen	MKLKNLIPQSYRSQVVRQFGDAKLIRRPDGQHELIGGTDADRADAHEWASLFAHEIVFTHFRREANARCRPRKPWLAPRLQPAH*
Ga0182013_104414541	3300014492	Bog	PGLTWQGMKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL*
Ga0182016_102966022	3300014493	Bog	MKLKNIIPQRYRNQVVRQFGAAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPLLQPAQ*
Ga0182017_108551451	3300014494	Fen	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRASAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLHPSLTVALPPPFAAQPRLR*
Ga0182019_108242811	3300014498	Fen	MKLKNIIPQRYRSQVVRQFGNAKLIRQPNGHHKLVGGTDADRADAFEWSSLFAHDIVFTHFHREDHARSRPRKPWFGPGLQPFCQ*
Ga0182012_100775732	3300014499	Bog	MKLKNIIPQRYRSQVVRQFGNAKLIRQPNGQQKLVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARNRPLKPWFSARLQPAL*
Ga0182012_105045331	3300014499	Bog	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL*
Ga0182024_101845852	3300014501	Permafrost	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHRDDHARSRPRKPSFAPRLQPAL*
Ga0182024_115266812	3300014501	Permafrost	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLKPICQ*
Ga0182021_101479502	3300014502	Fen	YRSQVVRQFGDAKLIRRPDGQHELIGGTDADRADAHEWASLFAHEIVFTHFRREANARCRPRKPWLAPRLQPAH*
Ga0182021_131980612	3300014502	Fen	GMKLKNIIPKRYRKQVVRQFGDAKLVRLTNGQHELVGGNDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVRP*
Ga0181519_109201501	3300014658	Bog	MKLKNIIHQRYRNQVVRQFGNAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIMFTHFHREDHVRSRPRKPWFAPRLQPAL*
Ga0182030_100329388	3300014838	Bog	MKLKNIIPQRCRYQIVRQFGAAKLIRWPNGQHELVGGTDTDRANALEWSSFFAHEIVFTHFHRVDHARSRPRKRWFAPRLQPAL*
Ga0182027_101618911	3300014839	Fen	LKNIIPQRYRSQVVRQFGDAKLIRRPNGKHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARRRPRKPWFATRLPEQICGFGREETVKSAF*
Ga0182027_104510262	3300014839	Fen	MKLKNIIPQRYRSQVVHQFGKAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL*
Ga0182027_117540431	3300014839	Fen	MKLKNIIPQRYRRQVVRQFGDAKLIRQPNGQHELVGGTDTDRAAALEWSSLFAHEIVFTHFHREDHAHRRPRKPWFAPRLQPIGP*
Ga0181512_16481952	3300019270	Peatland	VVQPPRVNWRGMKLQNLVPKRYRKQIVRQFGDAKLVRLHNGQHELIGGTNADRANAFEWTSHFAHEIVFTHFHREPKIRCRSRKPLFPSRLQPAM
Ga0214172_100002070	3300020733	Freshwater	MKLKNLIPQRYRQQIVQQFGQAKLVQLPNGQYELIGGTAADRATVFEWASLFAHEMVFTHFQRHAAGSRPNQTRLA
Ga0212088_100875342	3300022555	Freshwater Lake Hypolimnion	MKLKNLIPQRYRRRLIRRFGQAELVRLPNGQYELLGGTAADRAAAFEWTTLFAHEIVFTHFHREHPVRSRPRARWFPAGLQPAL
Ga0212088_106144992	3300022555	Freshwater Lake Hypolimnion	VLPSSVTWQGMKLKNLIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRAEAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFASRLQPASA
Ga0224555_11900951	3300023088	Soil	MKLKNIIPQRYRSQVVRQFGDAKLVRLHNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0224557_10783894	3300023101	Soil	MKLKNIIQQRCRSQVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARS
Ga0209083_12419641	3300025162	Freshwater	SSVTWQGMKLKNLIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRAEAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFASRLQPASA
Ga0208875_10092912	3300025410	Freshwater	MKLKNIIPQRYRSQVIRQFGAAKLIRQSNGQHELVGGSDADRAAAFEWSSLFAHEIVFTHFHRVDHARNRPRKPWFAPRLQPVCP
Ga0207932_10131632	3300025495	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRTDAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVCP
Ga0208716_10854302	3300025548	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVSG
Ga0209385_10224454	3300025650	Arctic Peat Soil	IPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPACP
Ga0209746_100115614	3300025716	Arctic Peat Soil	MWRGMKLKNIIPQRYRNQVVRQFGAAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDYARSRPRKPWFAPRLQPAL
Ga0209746_10028458	3300025716	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0209484_100091081	3300025829	Arctic Peat Soil	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDTDRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRFQPAL
Ga0208872_10346032	3300025838	Freshwater	MKLKNLIPQRYRRRLIRRFGQAELVRLPNGQYELLGGTEADRAAAFEWTTLFAHEIVFTHFHREHPVRSRPRARWFPAGLQPAL
Ga0209176_101047902	3300025854	Arctic Peat Soil	MWRGMKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVSA
Ga0209429_100718032	3300025864	Arctic Peat Soil	MWQGMKLKNLIPQRYRSQVVRQFGDAKLIRRPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARTRPRKPWFASRLQPASA
Ga0209226_101405471	3300025865	Arctic Peat Soil	MKLKNLIPQRCRSQVVRQFGDAKLIRQPNGQHELVGGTDTDRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQ
Ga0209540_103834502	3300025888	Arctic Peat Soil	MKLKNLIPQRCRSQVVRQFGDAKLIRQPNGQHELVGGTDTDRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0209067_101304433	3300027898	Watersheds	MKLKNLIPQRTRRQLVRQFGEASLVRLPNGQHELIGGTDADRTAAFEWTSLVAHEIVFTHFHRVAQTPCRNRRPLFASRLEPVCQ
Ga0209698_100204539	3300027911	Watersheds	MKLKNIFPQRYRRQLIRQFGDASLIRLPNGQHELRGGSDADRAAAFEWTSLFSHEIVFTHFQRDAQTRCRTRRTGFVSRLQHAL
Ga0209698_101284232	3300027911	Watersheds	MKLKNIIPQRYRSQIVRQFGNAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPACL
Ga0302266_100750134	3300028779	Bog	VHASGLTWRGMKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHKLVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302266_101931462	3300028779	Bog	MKLKNIIPQRYRSQVVRQFGNAKLIRQPNGQQKLVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARNRPLKPWFSARLQPAL
Ga0265338_103695281	3300028800	Rhizosphere	AFVQPLRVKWRGMKLKNIIPQRYRSQVVRQFGDAKLIRQPNGHHKLVGGTDTDRADAFEWTSLFAHEIVFTHFHREDHARNRSRKPWFAHRLQPAL
Ga0302265_10359842	3300028859	Bog	MKLKNIIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302278_101982184	3300028866	Bog	MKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHKLVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302155_100313993	3300028874	Bog	MKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0302200_101536091	3300028909	Bog	TAFVHASGLTWRGMKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHKLVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302200_102755911	3300028909	Bog	LTWQGMKLKKIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0302200_103528461	3300028909	Bog	PVKWRGMKLKNIIPQRYRRQVVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHRDEHAHSRPRKPWFAPRLQPTL
Ga0311327_102853572	3300029883	Bog	MKLKNIIPQRYRNQVVRQFGAAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0311341_100212921	3300029908	Bog	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0311361_100355171	3300029911	Bog	MKLKKIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0311362_102975991	3300029913	Bog	MKLKNIIPQRYRSQVVRQFGNAKLIRQPNGQQKLVGGTDADRANAFEWSSLFAHEIVFTHFHRDEHAHSRPRKPWFAPRLQPTL
Ga0311359_105664551	3300029914	Bog	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQ
Ga0311359_108068921	3300029914	Bog	HSPGLTWQGMKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0311363_112670232	3300029922	Fen	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWITPQLQPAL
Ga0311346_102066201	3300029952	Bog	TALVHSPGLTWQGMKLKKIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0311346_109050471	3300029952	Bog	MKLKNIIPQRYRRQVVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHRDEHAHSRPRKPWFAPRLQPTL
Ga0265324_100243522	3300029957	Rhizosphere	MKLKNLIPQRYRSQVVHPFGEAKLVKLPNGQHELVGGTDADRAAAFEWSSLFAHEIVFTHFHREDHARIRPRKPWFAPRLQPAL
Ga0302277_11062122	3300029982	Bog	SQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0311344_104684531	3300030020	Bog	QGMKLKKIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHVHREDHVRSRPRKPWFAPRLQPAL
Ga0311344_111132932	3300030020	Bog	MKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRQPWFAPRLQPAL
Ga0302191_100428445	3300030049	Bog	GMKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHKLVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302275_103515781	3300030518	Bog	MKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0311345_106069862	3300030688	Bog	MKLKNIIPQRYRSHVVRQFGDAKLIRKPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPSFAPRLQPAL
Ga0311345_113528312	3300030688	Bog	TWRGMKLKNIIPQRYRSHVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLKPVCQ
Ga0311335_109046342	3300030838	Fen	MKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHELAGGTDADRANAFEWSSLFAHEIVFTHFYREDQARSRLRKRWFAPRLQPVCQ
Ga0311366_110644402	3300030943	Fen	MKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHELVGGTDADRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFASRLQPVCP
Ga0302323_1018648401	3300031232	Fen	MKLKNIIPQRYRSQVVRQFGAAKLIRQPNGQHELAGGTDADRANAFEWSSLFAHEIVFTHFYREDHARSRPRKPWFAPRLQPVCQ
Ga0302323_1031279202	3300031232	Fen	PQRYRNQVVRQFGNAKLIRQPNGQHELVGGTDTDPANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0265327_103228602	3300031251	Rhizosphere	MWRRMKLKNLIPQRRRQQLVQQFGRAKLVKLPNGQHELIGGTDADRAAAFEWSTLFAHEIVFTHFHREDHDHNRPRKPWFTP
Ga0302318_107199411	3300031258	Bog	IIPQRYRSQVVRQFGDAKLIRQPNGQHELVGGTDNDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPAL
Ga0302320_113495942	3300031524	Bog	MKLKNIIPKRYRSQIVRQFGDAKLIRQPNGQHELVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPSFAPRLQPAL
Ga0310686_1015160412	3300031708	Soil	MKLKNIIPQRYRSQIVRQFGDAKLIRQPNGQHELVGGTDTDRAAAFEWSSLFAHEIVFTHFHREDHSRSRPRKPWFAPRLKPICQ
Ga0311351_114452221	3300031722	Fen	VVLPRRVTWRGMKLKNIIPQRYRNQVVRQFGDAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVCP
Ga0302321_1017129452	3300031726	Fen	WPSMNLKNIIPLRYRSRHIRQFGDAKLIRRPNGQHEFVGGTNTDRAAAFEWSSLFAHEIVFTHFLRENKTRSRPRKPWFTPGPQSVCQ
Ga0302322_1012158422	3300031902	Fen	MKLKHFFPQRHRRQIVRQFGDAQLIRQPNSQHTLVGGTDADRAAAFEWSSLFAHEIVFTHFYREAPAYCRQPWFARPLQPAL
Ga0302322_1025212431	3300031902	Fen	QVVRQFGKAKLIRRPNGQHELVGGTDADRGDALEWSSLFAHGIGFPLFHREDPARSHPRKPWFAPRLRPVCQ
Ga0316226_10063693	3300032562	Freshwater	MKLKHLIPQRYRSQVVRQFGAAKLIRQPNGQHELVGGTDADRASAFEWSSLFAHEIVFTHFHREDHARNRPRKPWFAPRLQPVCP
Ga0316227_12005782	3300032677	Freshwater	LIPQRYRSQVVRQFGAAKLIRQPNGQHELVGGTDADRASAFEWSSLFAHEIVFTHFHREDHARNRPRKPWFAPRLQPVCP
Ga0334840_007696_3189_3443	3300033824	Soil	MKLKNIIPQRYRNHVVRQFGDAKLIRQPNGQHKLVGGTDTDRANAFEWSSLFAHEIVFTHFHREDHARSRPRKPWIAPQLQPAL
Ga0370492_0005283_3255_3506	3300034282	Untreated Peat Soil	MKLKNLLAQRYRNQVVRQFGNAKLIRQPNGQHELVGGTETDRADAFEWSSLFAHEIVFTHVHHEHQARRPRKPWFAPRLQAAL
Ga0370492_0087777_763_1020	3300034282	Untreated Peat Soil	MKLKNITPQRHRSQVVCQFGKAKLIRQPNGQHELVGGTDADRADAFEWSSLFAHEIVFTHFHREDHARSRPRKPWFAPRLQPVSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103110

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences