NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164303_10375071

Scaffold Ga0164303_10375071


Overview

Basic Information
Taxon OID3300012957 Open in IMG/M
Scaffold IDGa0164303_10375071 Open in IMG/M
Source Dataset NameSoil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y
F091732Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0164303_103750711F001079GGGGGMEPSLQAASALPYVAWSSSSSALIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPAGGDYRVHCYTTWDTPEQLEAFLERGYTFERMLADLSEDIVLDRSLVMEKLF*
Ga0164303_103750713F091732AGGAGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIALSVVILPWD*
Ga0164303_103750714F012223N/ADTFFIFSGLAVLAFLAAWKAGHFHELDRQGSLPLLVEEEDYYTPDWALDEEEWLDGDA*
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