NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091732

Metagenome / Metatranscriptome Family F091732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091732
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 47 residues
Representative Sequence MGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFL
Number of Associated Samples 92
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.11 %
% of genes near scaffold ends (potentially truncated) 47.66 %
% of genes from short scaffolds (< 2000 bps) 49.53 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.467 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(29.907 % of family members)
Environment Ontology (ENVO) Unclassified
(27.103 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.748 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.95%    β-sheet: 0.00%    Coil/Unstructured: 54.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13442Cytochrome_CBB3 26.17
PF00171Aldedh 0.93
PF00115COX1 0.93
PF08757CotH 0.93
PF03597FixS 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.93
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.93
COG3197Cytochrome oxidase maturation protein, CcoS/FixS familyPosttranslational modification, protein turnover, chaperones [O] 0.93
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.93
COG5337Spore coat protein CotHCell wall/membrane/envelope biogenesis [M] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A50.47 %
All OrganismsrootAll Organisms49.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003990|Ga0055455_10153687All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium705Open in IMG/M
3300004479|Ga0062595_101425934All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria633Open in IMG/M
3300005338|Ga0068868_101362912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria661Open in IMG/M
3300005447|Ga0066689_10469629All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium791Open in IMG/M
3300005451|Ga0066681_10641695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria651Open in IMG/M
3300005459|Ga0068867_101525342All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria623Open in IMG/M
3300005884|Ga0075291_1042883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria596Open in IMG/M
3300005888|Ga0075289_1012543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1151Open in IMG/M
3300006794|Ga0066658_10458061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium694Open in IMG/M
3300006954|Ga0079219_10372263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium930Open in IMG/M
3300009012|Ga0066710_104542856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria519Open in IMG/M
3300010304|Ga0134088_10342930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300010304|Ga0134088_10355605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium711Open in IMG/M
3300010322|Ga0134084_10211380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium683Open in IMG/M
3300010323|Ga0134086_10415013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium543Open in IMG/M
3300010399|Ga0134127_12722354All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria574Open in IMG/M
3300012207|Ga0137381_10919671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium756Open in IMG/M
3300012207|Ga0137381_11096690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium685Open in IMG/M
3300012208|Ga0137376_10682426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium887Open in IMG/M
3300012285|Ga0137370_10479178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium760Open in IMG/M
3300012356|Ga0137371_10942993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium656Open in IMG/M
3300012361|Ga0137360_10206580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1593Open in IMG/M
3300012930|Ga0137407_10251849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1601Open in IMG/M
3300012938|Ga0162651_100038451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300012957|Ga0164303_10375071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria869Open in IMG/M
3300012958|Ga0164299_11181315All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria577Open in IMG/M
3300012961|Ga0164302_10937234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria668Open in IMG/M
3300012975|Ga0134110_10181553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium878Open in IMG/M
3300015242|Ga0137412_10881389All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
3300017659|Ga0134083_10348392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria637Open in IMG/M
3300018028|Ga0184608_10260214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium764Open in IMG/M
3300018074|Ga0184640_10351921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria668Open in IMG/M
3300018433|Ga0066667_10786705All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium807Open in IMG/M
3300018433|Ga0066667_12031272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium529Open in IMG/M
3300022195|Ga0222625_1481679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria529Open in IMG/M
3300023062|Ga0247791_1027558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria863Open in IMG/M
3300025900|Ga0207710_10756680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300026342|Ga0209057_1186776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium594Open in IMG/M
3300026547|Ga0209156_10333791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria668Open in IMG/M
3300027018|Ga0208475_1012460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium830Open in IMG/M
3300028705|Ga0307276_10074990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium787Open in IMG/M
3300028710|Ga0307322_10157846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria606Open in IMG/M
3300028716|Ga0307311_10187792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria603Open in IMG/M
3300028719|Ga0307301_10082744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1008Open in IMG/M
3300028720|Ga0307317_10114903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium896Open in IMG/M
3300028721|Ga0307315_10132977All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium748Open in IMG/M
3300028721|Ga0307315_10186581All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria639Open in IMG/M
3300028784|Ga0307282_10350021All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria714Open in IMG/M
3300028799|Ga0307284_10160104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium872Open in IMG/M
3300028799|Ga0307284_10258256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria694Open in IMG/M
3300028880|Ga0307300_10181591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria674Open in IMG/M
3300028881|Ga0307277_10249211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium783Open in IMG/M
3300031938|Ga0308175_102094788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria634Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil29.91%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil11.21%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil8.41%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.74%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.80%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost2.80%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.87%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.93%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.93%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300003990Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005884Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302EnvironmentalOpen in IMG/M
3300005888Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007820Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011994Permafrost microbial communities from Nunavut, Canada - A7_65cm_12MEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012938Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013764Permafrost microbial communities from Nunavut, Canada - A28_35cm_6MEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300022195Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023062Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027018Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)EnvironmentalOpen in IMG/M
3300027479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027665Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028705Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300030904Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031198Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_SEnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A2065W1_1023783033300001537PermafrostMGMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLW
Ga0055455_1015368733300003990Natural And Restored WetlandsMGMPSGDTPEKAEQFYHYLNAHQQTMQRAATWEVRWLDLAWLW
Ga0062589_10033463313300004156SoilMGMPSGDSPQTAQSYYHYLQAHQETMQRAATWHVRWVDLAWLWGFVIVLSLIAI
Ga0062595_10142593433300004479SoilMSLVPTSMPSGESPSKALQFYNYLQAHQQTQYKPDTWHVRWLDLAWLWGFLLALALV
Ga0062592_10239900623300004480SoilMGIPSGDSPQKAQQYYHYLQGHQETLQRADTWHVHWIDLAWLWGFLIVLILTILLWI
Ga0066683_1021756333300005172SoilMGMPSGDSPAKAHQYYEYLQSHQQTFQAPATWHVHWLDLAWLWGFLLALAVIILW
Ga0066684_1092477113300005179SoilMGMPKGDSPAKAQQYYHYIQGHSQTLQEPATWHVRWLDLAWLWGFLIVMALLIVWWIWQN
Ga0066676_1117000223300005186SoilMGMPRGDSPAKAHQYYEYLQSHDQTFQAPATWHVHWLDLAWLWGFLVALALIILWWL
Ga0068868_10136291213300005338Miscanthus RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFVIAL
Ga0070675_10187096413300005354Miscanthus RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFL
Ga0066689_1046962933300005447SoilMGMPRGDSPAKAHQYYEYLQSHDQTFQPPATWHVHWLDLAWLWGFLIALALI
Ga0066681_1064169513300005451SoilMPSGDSPQHARAYYHYLQAHQQTLHVPATWQVDYLALAWLWGF
Ga0068867_10152534233300005459Miscanthus RhizosphereMRMPSGDTPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLW
Ga0068859_10055776313300005617Switchgrass RhizosphereMGMPSGDSPAKAQAYYHYLQAHQLSMQRPATWEVRWVDLAWLWGFVI
Ga0075291_104288313300005884Rice Paddy SoilMEMPSGDSPATAQAYYHYLQAHQLTLQRPATWEVRW
Ga0075289_101254333300005888Rice Paddy SoilMGMPSGDSPATAQAYYHYLNAHQLSMQRPATWEVRWLDLAWLWGFAIALSVITLLWV*
Ga0066696_1034009513300006032SoilMGMPKGDTPQKAQQYYHYLQGHQETMQRAATWHVHWLDLAWLWGFLIALA
Ga0066652_10054244413300006046SoilMGIPNGDSPAKAHRYYEYLQSHQQTMQEPATWHVRWLDLAWLWGF
Ga0066658_1045806133300006794SoilMGMPSGDSPAHAHAYYQYLQAHQQTMQEPATWHVRWLDLAWMWGFVLVLALT
Ga0066665_1144528733300006796SoilMGMPSGDSPQKANEYYHYLQSHQLTMQRAATWHVRWLDLAWLWG
Ga0079219_1037226313300006954Agricultural SoilMGMPRGSSPDKAQAYYHYLNAHQLSMQRAGTWHVRWIDLAWLWGFMLVLALLILLWVW
Ga0104324_11351633300007820SoilMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLWGFVI
Ga0066710_10454285613300009012Grasslands SoilMSMPSGNSPAQVERYYHYLQGHQETMQAAATWHVKWV
Ga0105249_1064336233300009553Switchgrass RhizosphereMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFVIA
Ga0126313_1020573733300009840Serpentine SoilMPSGDSPEDVRQYYDYLQGHEETMQAPATWHVHWLDLAWLWGFLIVLVLAILLWIW
Ga0134070_1009431113300010301Grasslands SoilMPSGDSPAKAHQYYEYLQSHDQTFQAPATWHVHWLDLAWLW
Ga0134088_1034293033300010304Grasslands SoilMAMPRGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLALAVIILWWLGQ
Ga0134088_1035560513300010304Grasslands SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLD
Ga0134084_1021138033300010322Grasslands SoilMPSGDSPQKANEYYHYLQSHQLTMQRAATWHVRWLDLAWLWG
Ga0134086_1041501333300010323Grasslands SoilMGIPSGDSPQKAQQYYHYLQGHSETHYRAATWQVHWLDLAWLWGFVIA
Ga0134080_1002074913300010333Grasslands SoilMGMPSGDSPEKAQQYYHYLQGHQETYYRAATWHVHWLDLAWLWGFL
Ga0134127_1272235433300010399Terrestrial SoilMGLPFMGMPSGDTPDKAQRYYHYLQGHQETMQRAATWHV
Ga0120157_109702613300011994PermafrostMPSGDSPQHAQQYYHYLQAHQETMQRAATWHVRWIDLAWLWGFVIALTLMLLLW
Ga0137365_1017129813300012201Vadose Zone SoilMPSGDSPQHAQQYYHYLQGHQETLQVPATWHVHWLDLAWLWGFL
Ga0137365_1028301933300012201Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGF
Ga0137381_1091967133300012207Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQVPATWHVKWLDLA
Ga0137381_1109669013300012207Vadose Zone SoilMGIPSGDTPQKAQAYYHYLQSHQESLQAPNTWTVRWLDL
Ga0137376_1006076043300012208Vadose Zone SoilMPSGDSPQKAQQIVHYLQGHDQTYYRAATWQVRWLDLAWLWGFAIALTAAILLWV
Ga0137376_1068242613300012208Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTLQPPATWHVHWLDLAWLWGFL
Ga0137370_1047917813300012285Vadose Zone SoilMGLPMMGMPSGDTPDKARQYYLYLQGHQETMQRAATWHVRWL
Ga0137386_1017593033300012351Vadose Zone SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWIDLAWLWGFLLALAVIILWWLRQ*
Ga0137367_1032672033300012353Vadose Zone SoilMPSGESPSKAHQYYEYLQSHQQTQQVPATWHVRWLD
Ga0137367_1044959733300012353Vadose Zone SoilMGLPMMAMPGGDTPDKARQYYLYLQGHQETMQRAATWHVRWLDLAWLWGFL
Ga0137371_1094299333300012356Vadose Zone SoilMPSGDTPDKAQRYYHYLQGHQETMQRAATWHVHWLDLAWLWGFLIALALA
Ga0137384_1010113343300012357Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLAL
Ga0137384_1158114713300012357Vadose Zone SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLL
Ga0137375_1029858913300012360Vadose Zone SoilMPSGDTPQKVQDYYQYLQAHQETVHAPATWHVRWLDLAWLWGFLIVLA
Ga0137360_1020658013300012361Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQVPATWHVKWLDLAWLWGFLVALGLIILWW
Ga0157302_1006545913300012915SoilMPSGSSPEKAEQFYHYLQSHQLTMQRAATWHVRWLD
Ga0137407_1025184933300012930Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHQQTLEAPATWHVHWLDLAWLWGFLLALAVIILWWLGQYR
Ga0162651_10003845113300012938SoilMPSGESPEHAQQYYQYLQGHKETMYRADTWHVHWIDLAWLWG
Ga0164300_1018503033300012951SoilMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLW
Ga0164300_1110455013300012951SoilMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWVDLAWLWGFVIVLSLVLILW
Ga0164303_1037507133300012957SoilMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIALSVVILPWD*
Ga0164299_1118131533300012958SoilMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHDLAWLWGFAIALSVI
Ga0164302_1093723413300012961SoilMTRRSGPMGMPSCDSPAKAHQYYEYLQSHDQTMQVPATWHVH
Ga0134110_1018155313300012975Grasslands SoilMGIPSGDSPHKAQQYYHYLQGHQETMQRPDTWHVHWLDLAWL
Ga0157371_1029469913300013102Corn RhizosphereMPSGSSPEKSQQFYHYLQAHQLTMQKADTWHVRWMDLAWLWGFVIVLSLAIRFGLGFDAP
Ga0120111_100568153300013764PermafrostMPSGDSPQHAQQYYHYLQAHQESMQRPATWHVHWIDLAWLWGFVIALSLLL*
Ga0134079_1030808733300014166Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHQQTQQVPATWHVRWLDLAWLWGFLIVLSLIII*
Ga0173478_1073712723300015201SoilMGIPSGDSPQKAQQYYHYLQGHQETLQRADTWHVHWIDLAWLWGFLIVLILTILLW
Ga0137412_1088138933300015242Vadose Zone SoilMPRGDSPAKAHQYYEYLQSHQQTWQAPATWHIKWLDLAWLW
Ga0137403_1033395813300015264Vadose Zone SoilMPSGDSPAKAHQYYEYLQSHQQTFQAPATWHVHWLDLAWLWG
Ga0134083_1034839213300017659Grasslands SoilMGMPSGDSPEKAQQYYHYLQGHQETFYRAATWHVHWLDLAWLWGFLIVLTLAILLWMWQ
Ga0184608_1026021413300018028Groundwater SedimentMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLA
Ga0184620_1002510333300018051Groundwater SedimentMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIALVVVILL
Ga0184640_1035192113300018074Groundwater SedimentMGMPSGESPQHAHQYYQYLQAHKETMQRADTWHVQWIQLAWLW
Ga0066667_1078670513300018433Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHSQTMQPPATWHVRWLDLAWLWGFLVALALI
Ga0066667_1203127223300018433Grasslands SoilMGMPSGESPEKAQQYYNYLQGHSETHYRAATWHVHWLDLAWLWGFLIVLALATLLWIWQY
Ga0066669_1193440533300018482Grasslands SoilMGLPSASLTSGDTPDKAQRFYHYLQGHQETPERAATWHVRWVDLAWLWGFMIVI
Ga0193701_109574713300019875SoilMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIAL
Ga0222625_148167933300022195Groundwater SedimentMGMPSGGSPEDVRQYYLYLQGHQETMQRAATWHVHWV
Ga0247791_102755813300023062SoilMRMPSGDSPQKAQAYYHYLQAHQETMQRAATWEVRWIDLAWLWGFAI
Ga0207710_1075668013300025900Switchgrass RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLIAL
Ga0207671_1029880713300025914Corn RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLNWLWG
Ga0207709_1156388433300025935Miscanthus RhizosphereMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWLDLAWLWGFAIA
Ga0209236_126724233300026298Grasslands SoilMGMPSGDSPAKAHQYYEYLQSHDQTLQVPATWHVHWLDLAWLWGFLLALAVIIL
Ga0209057_118677613300026342SoilMGLPMMGMPSGDTPDKARQYYLYLQGHQETMQRAATWHVRWLDLA
Ga0209156_1021037713300026547SoilMGIPSGDTPSKAQAYYHYLQAHQESLQAPNTWTVRWLDLAWLWGFVAVLCVVVLL
Ga0209156_1033379113300026547SoilMGMPSGDSPGKAQAYYDYLQAHQQTMQHPDTWHVRWVDLAWLWGFVIV
Ga0208475_101246013300027018SoilMAMPSGDFDSPAKVTKYYDYLQAHSQTFQKPDTWHVHWLDLAWLWGFLIV
Ga0207636_100697513300027479SoilMRMPSGDSPQKAQAYYHYLQAHQETMQRAATWEVRWIDLAWLWG
Ga0209983_105688613300027665Arabidopsis Thaliana RhizosphereMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWG
Ga0307276_1007499033300028705SoilMGMPSGEAPAKAHQYYEYLQSHQQTMQDPATWHVRWLDLAWL
Ga0307322_1015784633300028710SoilMGMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWLDLAWLWGFAIALSVITLLWI
Ga0307311_1018779213300028716SoilMGMPSGESPQHAQQYYQYLQAHKETMQHADTWHVQWIQL
Ga0307311_1021233633300028716SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLVALVVIILW
Ga0307301_1002786833300028719SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLVALAVI
Ga0307301_1008222533300028719SoilMRMPSGESPEHARQYYLYLQGHQETMQRAASWHVHWLDLAWLWGFLIALALAT
Ga0307301_1008274433300028719SoilMGMPSGDSPATARHYYEYLQAHQQSMQDPATWHVRWI
Ga0307317_1011490313300028720SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLVALA
Ga0307315_1013297733300028721SoilMGMPSGDSPAKAHQYYEYLQSHQQTMQVPATWHVHWLDLAWLWGFLLAL
Ga0307315_1018658133300028721SoilMGMPSGDSPAKAQAYYHYLNAHQLSMQRPATWEVRWLDLA
Ga0307319_1031362033300028722SoilMGMPSGESPQHALQYYHYLQGHQETQYRAATWHVHWLD
Ga0307282_1003758243300028784SoilMGMPSGESPEHAQQYYQYLQAHKETMYRADTWHVHWIDLAWLWGFAIALVVIGR
Ga0307282_1035002113300028784SoilMGMPSGESPAKAHQYYEYLQSHQQTMQAPATWHVRWLDLAW
Ga0307284_1016010433300028799SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFLVAL
Ga0307284_1025825633300028799SoilMGMPNGESPAKAHQYYEYLQSHQQTLQSPATWHVRW
Ga0307289_1005973133300028875SoilMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHD
Ga0307300_1018159133300028880SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVVVI
Ga0307277_1024921133300028881SoilMGMPSGESPAKAHQYYEYLQSHQQTMQDPATWHVRWLDL
Ga0307308_1009924813300028884SoilMPIPSGDSPQQVDRYYNYLQGHQETMQSAATWHVHWVDLAWLW
Ga0308198_101021433300030904SoilMGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLA
Ga0308189_1010138913300031058SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVV
Ga0308187_1008780913300031114SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQL
Ga0307500_1025494633300031198SoilMGMPSGESPQHAQQYYQYLQAHKETMQRADTWHVQWIQLAWLWG
Ga0308175_10209478813300031938SoilMTRAPSSMPSGESPQHARRFYDYLQSHQETMYRPDTWHVRWVDLAWLWGFLIVLAAVLLW

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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