NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10011404

Scaffold Ga0163179_10011404


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10011404 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5810
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005351Metagenome / Metatranscriptome403Y
F009959Metagenome / Metatranscriptome310Y
F032680Metagenome / Metatranscriptome179Y
F096221Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_1001140410F096221N/AMKKKLKYICPECKAMYEGPQGATPFIVSWNDGHFCTPRLVGEEEVKKLSNKTESLKYDELWTTYYN*
Ga0163179_1001140413F032680N/AMTKYVSRIMDEVWDNFSNHFDDEDEKLDFLEELIDKLNDEIDYITYNRK*
Ga0163179_1001140420F005351N/AMYNPNSPSNWSWSKAFAEMEKTVNQAELEQQIINHLHGYKAEGKFLELSKSQQDDHYEILTQIL*
Ga0163179_100114047F009959N/AMTAQEVIWKVCDRMVNTMYNELDYYMFEELGYTETDDNYVAAADVLISRILKELTK*
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