| Basic Information | |
|---|---|
| Taxon OID | 3300012936 Open in IMG/M |
| Scaffold ID | Ga0163109_10003800 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11538 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Costa Rica: the Eastern Pacific | |||||||
| Coordinates | Lat. (o) | 9.5025 | Long. (o) | -92.3286 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000464 | Metagenome / Metatranscriptome | 1105 | Y |
| F002602 | Metagenome / Metatranscriptome | 544 | Y |
| F016994 | Metagenome / Metatranscriptome | 243 | N |
| F022908 | Metagenome / Metatranscriptome | 212 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163109_1000380010 | F016994 | AGGAGG | MPASENNTTFVAAQESLLGKELEFITIDAGEELANHQAKNETQNAIENTVRVYGNIVGAGPLFDTNASRTYIVEGTDMFVGAPASAGGAFTFSESGADGTAVGTLQAALKALGTIDGIDLNDSGTTAKIEDLTL* |
| Ga0163109_1000380017 | F000464 | N/A | MKLTKQQQIRLYTHHEPDLDIEEDFWPVMGTLLTVLAVWTGFIHLVDFFTIDSIPWWAEPFTITPIIFLIIMNEKYDSLNPLHWWPMCWGYQVKLPSREVITIRPLDQERIMKQHGGMRNVHIIDYETLKFRKRKDAVMFTLMNS* |
| Ga0163109_1000380018 | F002602 | AGG | MNKADQIKALAVAIEEKDSIIKKLSAEVGNLEFQNAEYSQIVKELSDQLKLYKNMYGTVFKSSSK* |
| Ga0163109_100038007 | F022908 | GAG | MPTHLDETIKIILSPDSKLRDKTPRIYQFPKEEHMPKPFSNLKRMRFLNHDLSAGRNIKRWLWRDYNPEIILQEPPFDKYEDQSEIFTLIRHPEQRWWSGIKEMFYFMPWYTWWKNEAIMEQWPHFTRGTFRLHDVMEQVKPKHLIKCDDGLNERIIAFAKKHGLLCYGNIPHEKALRHTKPDIKMLEDKGVRELKSWLRKNSNYQKKLDEYLEPDWQYWEKVEYQD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |