NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151622_1519071

Scaffold Ga0151622_1519071


Overview

Basic Information
Taxon OID3300011266 Open in IMG/M
Scaffold IDGa0151622_1519071 Open in IMG/M
Source Dataset NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterXcelris labs Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location
Location NameMalanjkhand , India
CoordinatesLat. (o)22.023017Long. (o)80.732183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002347Metagenome / Metatranscriptome568Y
F084777Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0151622_15190711F084777N/AXXXKSANALVGWLLQQAADRADANYQPKAGQTCKGRETLGVQGLFGGFQLERDYYYHPGKAQGHHPADAALGLEVG
Ga0151622_15190712F002347N/ANQPDKTRLWEQIAAIPAMERGTLSPHSSGRHLKLQSWQEGKNHTRHVSADELPAVHSALAGYAQYRKLTDQYADRVIQETRQNIAAAKKSIAPASRPPRPRGRNPAPDRPL*

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