NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011266

3300011266: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55



Overview

Basic Information
IMG/M Taxon OID3300011266 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121499 | Gp0175552 | Ga0151622
Sample NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55
Sequencing StatusPermanent Draft
Sequencing CenterXcelris labs Ltd
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size263997598
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group2
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available3
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAcid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → acid mine drainage → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationMalanjkhand , India
CoordinatesLat. (o)22.023017Long. (o)80.732183Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002347Metagenome / Metatranscriptome568Y
F010006Metagenome / Metatranscriptome310Y
F012612Metagenome279Y
F013334Metagenome / Metatranscriptome272Y
F016087Metagenome / Metatranscriptome250Y
F021763Metagenome / Metatranscriptome217Y
F026036Metagenome / Metatranscriptome199Y
F041845Metagenome159Y
F042529Metagenome158Y
F052268Metagenome143Y
F060367Metagenome / Metatranscriptome133Y
F079180Metagenome / Metatranscriptome116Y
F082782Metagenome / Metatranscriptome113Y
F082980Metagenome / Metatranscriptome113Y
F084777Metagenome / Metatranscriptome112Y
F094068Metagenome / Metatranscriptome106Y
F103675Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151622_1010461All Organisms → cellular organisms → Bacteria → Terrabacteria group741Open in IMG/M
Ga0151622_1013095All Organisms → cellular organisms → Bacteria9005Open in IMG/M
Ga0151622_1048557All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae3389Open in IMG/M
Ga0151622_1051142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1927Open in IMG/M
Ga0151622_1062299All Organisms → cellular organisms → Bacteria720Open in IMG/M
Ga0151622_1077689All Organisms → cellular organisms → Bacteria905Open in IMG/M
Ga0151622_1081543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1297Open in IMG/M
Ga0151622_1110776All Organisms → cellular organisms → Bacteria → Terrabacteria group2532Open in IMG/M
Ga0151622_1145741All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria572Open in IMG/M
Ga0151622_1150887All Organisms → cellular organisms → Bacteria4302Open in IMG/M
Ga0151622_1213732All Organisms → cellular organisms → Bacteria1228Open in IMG/M
Ga0151622_1304011Not Available550Open in IMG/M
Ga0151622_1383522Not Available518Open in IMG/M
Ga0151622_1429992All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium632Open in IMG/M
Ga0151622_1509443Not Available752Open in IMG/M
Ga0151622_1519071All Organisms → cellular organisms → Bacteria662Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151622_1010461Ga0151622_10104611F010006GRASQVTVRRAPRRPALIPNENEVTAMAEPMGSRHAAEIARAKQTPHLHEPRLVVSRDVAGERLLDRIADLVNRLIGSMWLFVAITTGIVVWLFAGNFVGFDKTPWPLLLTLLNLPQLSIMISLQVSANRAQAASDARAMADHATLVALHQLAKRQVAILDGQNEVLEVVRRAVAAGEPRSQL*
Ga0151622_1013095Ga0151622_101309510F082782VHVTAEACEALARLLARRNSPDRCLRLSTAQGNYRFILDEPIEQDITYHHDERIVLVVSETVSRDLWGITIDCAEEEGRRKLIFRKAKGGEPFEAIRDDAQVVPPQWRASEHERLLAEIAEIGRQIASLRGGSKSMLRDQLQLLEAAKQEKWDAIRTLWAGDGGWHKRNGTTVASPPAD*
Ga0151622_1048557Ga0151622_10485573F079180MALFKEDKSAAFIGLIVTAALLFIMAFTIVTLTNKKYAGERGTTATETK*
Ga0151622_1051142Ga0151622_10511422F013334MGRNKVKPEQASKVLMRMPTLRSFGEGCTRGEVIDKRTHAIRRGSGYGTSVGWFVVTGGDPSRTRVAASASHLAVVTAGVGRGSRSVDAG*
Ga0151622_1062299Ga0151622_10622991F103675VVRPAATGLATAFYRLYLLDALAAEPARPTALLARIASERLPLASGGFSRALHSLLEGGYLVACEEGRV
Ga0151622_1077689Ga0151622_10776891F052268DWIGFQYNSANETRKTYPGLPGRWSGRPYDFVAGGAGLKFPGLPAEVTGCLDGT*
Ga0151622_1081543Ga0151622_10815432F021763VCLVCVSAQRPVIVAWRLLQGTASEKGREAEVTRELVEQASRLGGGDCIELLPADALYADGPLIAWLAYEKGIDVLVPLPSDRLMVRDALGMAQRDLLTWTRHRYVHTVQGHKQARTIAVASVGAMTSWDSFTAAARGYGVPDASLWVTLVREIEPEEKPLNDSWALVSTRRFANGYAAFQAYRPRWHIENDGYRELKEGFGLEQQRWGRDASAAHCRTTLTLLAFNTAQIYRCRGGQRLATLGIRRLRRQSQAELGRSPVVLFMDDCYGVLAVEELLSVVGFPARQGLLPALHLPNRPHGPT*
Ga0151622_1110776Ga0151622_11107763F012612MWEMPDGTQIRYLGTVTSDAGLREFVLRFMAAEGASWDASKWDERVLAAAFLRRFGEAVAVTRERAAGRMVLVLRPVMTATGA*
Ga0151622_1145741Ga0151622_11457411F026036PRSGMKSSSRRETVPHAGIAGRPLPAFALAFLLALVVLPVTAQAGVSLTEMARLEASEEATIDGTRSLFRGYLSLGLLPEAASLLERRVRMGMFPLQEAIPFFENVVAEQGRFDDPRRLVAVCESAIRSGVRTSAVLYHYGTGLRGIGGRFGDASSALAQVGTESPYRFLAVFSLGQIAAEKGEIPSALD
Ga0151622_1150887Ga0151622_11508874F042529MERIVLAIRREHADALLDGTATVERRTVPPKRLPARAYLAVVGTRSVAGECVLGPPTGRSGAGWALPVTRARRYRRPRPVGDYGLTKVPRSFRYV*
Ga0151622_1213732Ga0151622_12137321F060367XXXSTGHHIGSPVKVATAIDGATDYPIALGRQTYQDSAFRSWAAGNLTADPTMPGHLAVVWSDMRNSDTPAPADPYTATTNSDVVVSQSFDYGQTWSGPTALEISNDQFMPWGAYDTNGLLRIGFFDRSYDSANHKYGYTLATETAAGSLAFTTTQVTTALSDPTKDTRWFS
Ga0151622_1304011Ga0151622_13040112F094068IPHDSREEVMKKGMTQTWVSVLGMAFIIWLSITVSVPLEVSAETPCCSITNIDVKTGIVTAKNTSTGETFEFRLVAAGQIRNIRIGDQVSPDFQTRAVTVHSFQPVDGILIKPPKHPAQIK*
Ga0151622_1383522Ga0151622_13835221F041845MPLELSVLEKLEIAHRLVAEVLGRTPQLYDCRLDQALLVLGLSIKRAQRSPQMRLRLPPDRREESFLF*
Ga0151622_1429992Ga0151622_14299921F082980YAKAPNTLYEGQYRRAEREGECPHTQIAVVVDGRKAGTVMHVCADEKCQTHRQSSRYEISPQEREQRRKLALAVRVQKEARARILQAVRTKLPATLARADFEMVALDYFKRLGHDNHHRLFQVYGWEEKKTKTSWGGISVDHEKLAEARIRAMTAADLNRFMVACALVPDLYCPGYSSAETLSKEANLMRAAARYKIDASKITAKVLREL
Ga0151622_1509443Ga0151622_15094432F016087MKGGAMERFWNIMGGLLDYFEYLGLVLLFAALAFSVGYHMGFSVGLDTKVTWVGDQYTMKLTGNGR
Ga0151622_1519071Ga0151622_15190711F084777XXXKSANALVGWLLQQAADRADANYQPKAGQTCKGRETLGVQGLFGGFQLERDYYYHPGKAQGHHPADAALGLEVG
Ga0151622_1519071Ga0151622_15190712F002347NQPDKTRLWEQIAAIPAMERGTLSPHSSGRHLKLQSWQEGKNHTRHVSADELPAVHSALAGYAQYRKLTDQYADRVIQETRQNIAAAKKSIAPASRPPRPRGRNPAPDRPL*
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