NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_13097895

Scaffold Ga0126379_13097895


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_13097895 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000402Metagenome / Metatranscriptome1180Y
F090121Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0126379_130978951F000402AGGAGMEEHGDCTSGVCPGASVNGETVSLSVPYHHPLLRLQRALPWEALSEVMTRHWRRAGKNVDGHPGLAWDIALYVPLVVLMVVKNLHARDMEAYLAENVVARVFIGRQDAPRPQIRDHSTIARAYAALGQDGVEEVN
Ga0126379_130978952F090121GAGMASHTSRHTGKNSGFSTQDEHVVLLGWEALTEALYLRYATCSN

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