Metagenome / Metatranscriptome Family F090121

Basic Information
Family ID	F090121
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRS
Number of Associated Samples	93
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.16 %
% of genes near scaffold ends (potentially truncated)	84.26 %
% of genes from short scaffolds (< 2000 bps)	89.81 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Most Common Taxonomy
Group	Bacteria (87.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.444 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 0.00% Coil/Unstructured: 76.47%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01609	DDE_Tnp_1	2.78
PF05598	DUF772	1.85
PF01555	N6_N4_Mtase	0.93
PF00496	SBP_bac_5	0.93
PF07681	DoxX	0.93
PF01656	CbiA	0.93
PF13586	DDE_Tnp_1_2	0.93
PF13701	DDE_Tnp_1_4	0.93
PF13385	Laminin_G_3	0.93
PF13551	HTH_29	0.93
PF02445	NadA	0.93
PF12804	NTP_transf_3	0.93
PF00044	Gp_dh_N	0.93
PF13546	DDE_5	0.93
PF01610	DDE_Tnp_ISL3	0.93
PF13340	DUF4096	0.93
PF03400	DDE_Tnp_IS1	0.93
PF03458	Gly_transporter	0.93
PF01844	HNH	0.93
PF03811	Zn_Tnp_IS1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	2.78
COG3293	Transposase	Mobilome: prophages, transposons [X]	2.78
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	2.78
COG5421	Transposase	Mobilome: prophages, transposons [X]	2.78
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	2.78
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	2.78
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.93
COG0379	Quinolinate synthase	Coenzyme transport and metabolism [H]	0.93
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.93
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	0.93
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3677	Transposase InsA	Mobilome: prophages, transposons [X]	0.93
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.96 %
Unclassified	root	N/A	12.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.96 %
Unclassified	root	N/A	12.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.04 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.81 %
Unclassified	root	N/A	12.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.93 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	63.89 %
Unclassified	root	N/A	12.04 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.85 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	63.89 %
Unclassified	root	N/A	12.04 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.85 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	63.89 %
Unclassified	root	N/A	12.04 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.93 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Unclassified	root	N/A	12.04 %
Haliea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Unclassified	root	N/A	12.04 %
Cyanothecaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae	0.93 %
unclassified Haliea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Unclassified	root	N/A	12.04 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Cyanothece	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Unclassified	root	N/A	12.04 %
unclassified Cyanothece	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece	0.93 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Unclassified	root	N/A	12.04 %
Cyanothece sp. PCC 7425	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece → Cyanothece sp. PCC 7425	0.93 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_2059622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	930	Open in IMG/M
3300000550\|F24TB_10094406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	619	Open in IMG/M
3300000559\|F14TC_100068721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1426	Open in IMG/M
3300000559\|F14TC_102109357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	512	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1004276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1651	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1007935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1187	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1001056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1698	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1004760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	927	Open in IMG/M
3300000754\|JGI11851J11668_1000290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1653	Open in IMG/M
3300000858\|JGI10213J12805_10124413	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1434	Open in IMG/M
3300000953\|JGI11615J12901_10084778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	791	Open in IMG/M
3300001661\|JGI12053J15887_10153282	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1208	Open in IMG/M
3300002558\|JGI25385J37094_10093058	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	909	Open in IMG/M
3300002561\|JGI25384J37096_10091732	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1079	Open in IMG/M
3300002568\|C688J35102_120490042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1112	Open in IMG/M
3300002907\|JGI25613J43889_10026315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1647	Open in IMG/M
3300002908\|JGI25382J43887_10300864	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	702	Open in IMG/M
3300003203\|JGI25406J46586_10116033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	790	Open in IMG/M
3300003659\|JGI25404J52841_10129648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	533	Open in IMG/M
3300004016\|Ga0058689_10155252	Not Available	530	Open in IMG/M
3300004081\|Ga0063454_100498092	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	855	Open in IMG/M
3300004463\|Ga0063356_101206565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1099	Open in IMG/M
3300005186\|Ga0066676_11005248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	554	Open in IMG/M
3300005289\|Ga0065704_10110264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece → Cyanothece sp. PCC 7425	1984	Open in IMG/M
3300005294\|Ga0065705_10009645	All Organisms → cellular organisms → Bacteria → Proteobacteria	5190	Open in IMG/M
3300005294\|Ga0065705_10165632	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1737	Open in IMG/M
3300005295\|Ga0065707_10122812	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2080	Open in IMG/M
3300005332\|Ga0066388_103904759	Not Available	760	Open in IMG/M
3300005446\|Ga0066686_10385739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	957	Open in IMG/M
3300005467\|Ga0070706_100735952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	914	Open in IMG/M
3300005556\|Ga0066707_10378011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	924	Open in IMG/M
3300005559\|Ga0066700_10901489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	587	Open in IMG/M
3300005561\|Ga0066699_10452170	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300005713\|Ga0066905_101732659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	575	Open in IMG/M
3300005719\|Ga0068861_100175297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1780	Open in IMG/M
3300005764\|Ga0066903_100653422	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1839	Open in IMG/M
3300005764\|Ga0066903_102518819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	996	Open in IMG/M
3300005764\|Ga0066903_103540814	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005764\|Ga0066903_106339789	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	617	Open in IMG/M
3300005937\|Ga0081455_10145399	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1835	Open in IMG/M
3300006797\|Ga0066659_11277146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	612	Open in IMG/M
3300006845\|Ga0075421_100317536	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1889	Open in IMG/M
3300006845\|Ga0075421_101379760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	776	Open in IMG/M
3300006845\|Ga0075421_102318221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	564	Open in IMG/M
3300006853\|Ga0075420_100199050	All Organisms → cellular organisms → Bacteria → Acidobacteria	1750	Open in IMG/M
3300006854\|Ga0075425_100434621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1511	Open in IMG/M
3300006854\|Ga0075425_101159166	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006871\|Ga0075434_102034539	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300006880\|Ga0075429_100181269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1845	Open in IMG/M
3300006969\|Ga0075419_10059192	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2415	Open in IMG/M
3300007258\|Ga0099793_10048857	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300009090\|Ga0099827_10385633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	1196	Open in IMG/M
3300009090\|Ga0099827_10995039	Not Available	727	Open in IMG/M
3300009100\|Ga0075418_11220261	Not Available	815	Open in IMG/M
3300009147\|Ga0114129_10144278	All Organisms → cellular organisms → Bacteria	3262	Open in IMG/M
3300009553\|Ga0105249_10319788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1563	Open in IMG/M
3300010366\|Ga0126379_13097895	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	556	Open in IMG/M
3300011270\|Ga0137391_10265836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1484	Open in IMG/M
3300012202\|Ga0137363_11262205	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	626	Open in IMG/M
3300012205\|Ga0137362_10880151	Not Available	766	Open in IMG/M
3300012207\|Ga0137381_10255312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1524	Open in IMG/M
3300012350\|Ga0137372_10255846	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1375	Open in IMG/M
3300012353\|Ga0137367_10143490	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300012357\|Ga0137384_10643971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	863	Open in IMG/M
3300012363\|Ga0137390_10413877	Not Available	1326	Open in IMG/M
3300012469\|Ga0150984_108200001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2281	Open in IMG/M
3300012532\|Ga0137373_10995346	Not Available	607	Open in IMG/M
3300012929\|Ga0137404_10441437	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	1153	Open in IMG/M
3300015053\|Ga0137405_1029455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1111	Open in IMG/M
3300016422\|Ga0182039_12268968	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	501	Open in IMG/M
3300019233\|Ga0184645_1162813	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1210	Open in IMG/M
3300019259\|Ga0184646_1421236	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300021073\|Ga0210378_10221179	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	720	Open in IMG/M
3300025910\|Ga0207684_10060454	All Organisms → cellular organisms → Bacteria	3218	Open in IMG/M
3300026313\|Ga0209761_1088754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1578	Open in IMG/M
3300026320\|Ga0209131_1086086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1685	Open in IMG/M
3300026529\|Ga0209806_1194067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	716	Open in IMG/M
3300027846\|Ga0209180_10162700	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300027873\|Ga0209814_10051512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1718	Open in IMG/M
3300027880\|Ga0209481_10065247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1712	Open in IMG/M
3300027882\|Ga0209590_10300509	Not Available	1030	Open in IMG/M
3300027882\|Ga0209590_10662269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	669	Open in IMG/M
3300027907\|Ga0207428_10154386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1746	Open in IMG/M
3300027909\|Ga0209382_10090035	All Organisms → cellular organisms → Bacteria	3605	Open in IMG/M
3300028536\|Ga0137415_10093627	All Organisms → cellular organisms → Bacteria	2859	Open in IMG/M
3300028608\|Ga0247819_10081067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1591	Open in IMG/M
3300028799\|Ga0307284_10066992	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1293	Open in IMG/M
3300030336\|Ga0247826_11247923	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	597	Open in IMG/M
3300031094\|Ga0308199_1089155	Not Available	664	Open in IMG/M
3300031421\|Ga0308194_10204789	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031421\|Ga0308194_10212261	Not Available	632	Open in IMG/M
3300031421\|Ga0308194_10301815	Not Available	555	Open in IMG/M
3300031751\|Ga0318494_10882938	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031770\|Ga0318521_10461211	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	761	Open in IMG/M
3300031777\|Ga0318543_10218690	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	847	Open in IMG/M
3300031797\|Ga0318550_10057359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1764	Open in IMG/M
3300031912\|Ga0306921_10356269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1710	Open in IMG/M
3300031942\|Ga0310916_10570943	Not Available	962	Open in IMG/M
3300031945\|Ga0310913_10454036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	910	Open in IMG/M
3300032035\|Ga0310911_10780480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	552	Open in IMG/M
3300032052\|Ga0318506_10076667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1396	Open in IMG/M
3300032060\|Ga0318505_10055171	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1714	Open in IMG/M
3300032060\|Ga0318505_10249391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	835	Open in IMG/M
3300032076\|Ga0306924_11601913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300032174\|Ga0307470_10912895	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	691	Open in IMG/M
3300033289\|Ga0310914_10157784	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2006	Open in IMG/M
3300034644\|Ga0370548_037832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	817	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.93%
Host-Associated	Host-Associated	24.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.15%
Plants	Host-Associated → Plants	24.07%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.48%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Loam	Environmental → Terrestrial → Soil → Loam	17.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.19%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.56%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090121

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0118.00005720	2162886007	Switchgrass Rhizosphere	VHTLWSIRKNSGFSTQEEHLGLLGVEALTNALNLRYATRSIY
F24TB_100944062	3300000550	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYATR
F14TC_1000687211	3300000559	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYAT
F14TC_1021093571	3300000559	Soil	VHTLWYSRKNSGFSTQEEHLVLLGLEALTNALNLRYATRS
KanNP_Total_noBrdU_T14TCDRAFT_10042762	3300000596	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRSIY
KanNP_Total_noBrdU_T14TCDRAFT_10079351	3300000596	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYATRSI
KanNP_Total_F14TBDRAFT_10010563	3300000709	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRS
KanNP_Total_F14TBDRAFT_10047601	3300000709	Soil	VHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSN
JGI11851J11668_10002902	3300000754	Soil	VHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSI
JGI10213J12805_101244131	3300000858	Soil	MGLHTSRHTRKNSSFSTQGKRIGLLGLEALPYAAHLHYATRS
JGI11615J12901_100847782	3300000953	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRSN*
JGI12053J15887_101532822	3300001661	Forest Soil	LHTPRHTRKNSSFSTQDEHLGLLGLEALTETPNLHYATRS
JGI25385J37094_100930581	3300002558	Grasslands Soil	LHTSRHTRKNSGFSTQDEPLGLLGLEALTEAPNFHYATRS
JGI25384J37096_100917322	3300002561	Grasslands Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRS
C688J35102_1204900421	3300002568	Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRS
JGI25613J43889_100263151	3300002907	Grasslands Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSX
JGI25382J43887_103008642	3300002908	Grasslands Soil	LHTSRHTRKNSXFSTQXEPLGLLGLEALTEAPNFHYATRSXXSV
JGI25406J46586_101160331	3300003203	Tabebuia Heterophylla Rhizosphere	MGLHTSRHTRKNSSFSTQDEHLVLLGLEALTAAPNLRYATRSIY
JGI25404J52841_101296481	3300003659	Tabebuia Heterophylla Rhizosphere	VHTSGHTRKNSSFSTQDEHQVLLGLEALTDVPNLRYATRSN
Ga0058689_101552522	3300004016	Agave	MGLHASRHTRKNSSFSTQVERLVLLGLEALTGVSNLHYVDTL*
Ga0063454_1004980921	3300004081	Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSTYVYELYQLHQI*
Ga0063356_1012065651	3300004463	Arabidopsis Thaliana Rhizosphere	LHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPNRRYATRS
Ga0066676_110052481	3300005186	Soil	MGLHTSRHTRKNSSFSTQDKRIVLLGLEALPYASHLHYATCS
Ga0065704_101102641	3300005289	Switchgrass Rhizosphere	VHTLWSIRKNSGFSTQEEHLGLLGVEALTNALNLRYATRSN*
Ga0065705_100096457	3300005294	Switchgrass Rhizosphere	RHIRKNSSFSTQDEHIVLLGLEALTETPNLRYATRPNYY*
Ga0065705_101656322	3300005294	Switchgrass Rhizosphere	VHTPRHIRKNSGFSTQDEHIGLLGLEALTETLYLRYATCS
Ga0065707_101228123	3300005295	Switchgrass Rhizosphere	VHTPRHIRENSGFSTQDEHSVLLGLEALTETLNLRYATRSTYRFHGT
Ga0066388_1039047592	3300005332	Tropical Forest Soil	AIRVHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSI*
Ga0066686_103857392	3300005446	Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSTYRQRFFRSLQNGL
Ga0070706_1007359524	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LHTSRHTKKNSSFSTQDEHLVLLGLEALTGVSNLHYATRSIYGGTLAEFQTC
Ga0066707_103780111	3300005556	Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRSS*
Ga0066700_109014892	3300005559	Soil	HTSRHTRKNSDFSTQDEHLVLLGLEALPAALNLHYATRSK*
Ga0066699_104521702	3300005561	Soil	IGLHTSRHTRKNSSFSTQDEHRVLLGSEALTDAPNLRYATRST*
Ga0066905_1017326592	3300005713	Tropical Forest Soil	MASHTSRHTGKNSGFSTQDEHLVLLGLEALTDTSNFRSATRSN*
Ga0068861_1001752971	3300005719	Switchgrass Rhizosphere	VHTPRHIRENSGFSTQDEHSVLLGLEALTETLNLRYATRS
Ga0066903_1006534221	3300005764	Tropical Forest Soil	VHTSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRS
Ga0066903_1025188193	3300005764	Tropical Forest Soil	HTSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRST*
Ga0066903_1035408143	3300005764	Tropical Forest Soil	TSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRSI*
Ga0066903_1063397891	3300005764	Tropical Forest Soil	MGSHTSRHTGKNSEFSTQDEHLVLLGLEALTDISNFRSATRSI*
Ga0081455_101453992	3300005937	Tabebuia Heterophylla Rhizosphere	MHTPRHIRKNSGFSTQDEHIVLLGLEALTETPNLRYATRSI*
Ga0066659_112771461	3300006797	Soil	MGSHTSRHTGKNSGFSTQDEHLVLLGLEALTDTSNFRSATRS
Ga0075421_1003175362	3300006845	Populus Rhizosphere	LHTSVHTRKNSSFSTQDEHLVLLGLEALTNVPNLRYATRSS*
Ga0075421_1013797602	3300006845	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEPLVLLGLEALTEASNLRYATRST*
Ga0075421_1023182211	3300006845	Populus Rhizosphere	VHTPRHIRKNSSFSTQDEHIVLLGLEALTETPNLRYATRS
Ga0075431_1010570182	3300006847	Populus Rhizosphere	GEMGSHTSRHTGKNSGFSTQDEHLMLLGLEALTDTS*
Ga0075420_1001990501	3300006853	Populus Rhizosphere	MGLHTSSHTRKNSSFSTQDEHLLLLGLEALTGVSNLHYATRSI*
Ga0075425_1004346212	3300006854	Populus Rhizosphere	VHTPRHIRKNSGFSTQEEHIVLLGLEALTETPNLRYATRSK
Ga0075425_1011591661	3300006854	Populus Rhizosphere	NSGFSTQEEHLGLLGLEALTNALNLRYATRSKYYNAPLKG*
Ga0075434_1020345391	3300006871	Populus Rhizosphere	VHTLWYIRKNSGFSTQEEHLGLLGLEALTNALNLRYATRSKYYNAPLKG*
Ga0075429_1001812691	3300006880	Populus Rhizosphere	MGSHTSRHTGKNSGFSTQDEHLMLLGLEALTDTSNFRSATRSS
Ga0075419_100591922	3300006969	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEPLVLLGLEALTEASNLRYATRSIYTRRRNLLENVDI*
Ga0099793_100488571	3300007258	Vadose Zone Soil	GEIGLHTSRHTRKNSSFSTQDKHLVLLGLEALTDAPNLRYATRSN*
Ga0099827_103856332	3300009090	Vadose Zone Soil	LHTSRDTRKNSVFSTQDEHLGLLGLEALTEALNFHYAKRSIYVVLFSCYLDS*
Ga0099827_109950391	3300009090	Vadose Zone Soil	RKNSVFSTQDEHLGLLGLEALTEALNFHYAKRSTY*
Ga0075418_112202611	3300009100	Populus Rhizosphere	TRKNSSFSTQGEHQVLLGLEALADGPNLRYATCSKYLGVS*
Ga0114129_101442783	3300009147	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRST*
Ga0105249_103197881	3300009553	Switchgrass Rhizosphere	VHTPRHIRKNSGFSTQDEHIGLLGLEALTETLYLRYATCSN
Ga0126379_130978952	3300010366	Tropical Forest Soil	MASHTSRHTGKNSGFSTQDEHVVLLGWEALTEALYLRYATCSN
Ga0137391_102658361	3300011270	Vadose Zone Soil	GEIGLHTSRHTRKNSSFSTQDEHLVLLGLEALTEAPNPHYAVVSL*
Ga0137363_112622051	3300012202	Vadose Zone Soil	RHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSI*
Ga0137362_108801511	3300012205	Vadose Zone Soil	TRKNSSFSTQDEHPVLLGLEALTAVPNLRYATRSIYEMDI*
Ga0137381_102553121	3300012207	Vadose Zone Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSNY
Ga0137372_102558461	3300012350	Vadose Zone Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRS
Ga0137367_101434903	3300012353	Vadose Zone Soil	HTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRST*
Ga0137384_106439712	3300012357	Vadose Zone Soil	MSLHTSRHTRKNSSFSTQDEHLVLLGLEALTGVSNLHYA
Ga0137390_104138773	3300012363	Vadose Zone Soil	CGAIGLPTSRDTRKNSVFSTQDEHLGLLGLEALTEALNFHYATRSN*
Ga0150984_1082000013	3300012469	Avena Fatua Rhizosphere	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSI*
Ga0137373_109953461	3300012532	Vadose Zone Soil	SKNSSFSTQDEHLMLLGLEALTDAPNLRYATRST*
Ga0137404_104414371	3300012929	Vadose Zone Soil	GLHTSRHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSK*
Ga0137405_10294551	3300015053	Vadose Zone Soil	LHTSRHTRKNSGFSTQDEHLVLLGLEALTEVPNLRYATRSTYYGLRTRS
Ga0182039_122689682	3300016422	Soil	MASHTSRHTGKNSGFATQDEHLVLLGLEALTDTSNFCPATRSIYPTP
Ga0184645_11628131	3300019233	Groundwater Sediment	TSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSK
Ga0184646_14212363	3300019259	Groundwater Sediment	LHTSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSK
Ga0210378_102211792	3300021073	Groundwater Sediment	LHTSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSIYPL
Ga0207684_100604545	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MCFHILRHSRKNSDFSTQDEHLVLLGLASLTEAPHLRYATRSH
Ga0209761_10887543	3300026313	Grasslands Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYAT
Ga0209131_10860861	3300026320	Grasslands Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSSYIGVNK
Ga0209806_11940671	3300026529	Soil	MGLHTSRHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSRYTLVM
Ga0209180_101627002	3300027846	Vadose Zone Soil	GLHTSRHTSKNSRFSTQDEHLVLLGLEALTAAANLRYATRSSYLRQVER
Ga0209814_100515121	3300027873	Populus Rhizosphere	MHTSGHTRKNSSFSTQGEHQVLLGLEALADGPNLRYATCS
Ga0209481_100652472	3300027880	Populus Rhizosphere	MGLHTSRHTRKNSSFSTQDKHIVLLGLEALPYASHLHYATCSNYHK
Ga0209590_103005091	3300027882	Vadose Zone Soil	TRKNSSFSTQDEHLVLLGLEALTEAPNPHYATRSI
Ga0209590_106622692	3300027882	Vadose Zone Soil	MGLHTSRHTRKNSSFSTQDKHLVLLGLEALTDAPNSRYATRSIY
Ga0207428_101543862	3300027907	Populus Rhizosphere	MGLHTSSHTRKNSSFSTQDEHLLLLGLEALTGVSNLHYATRSR
Ga0209382_100900354	3300027909	Populus Rhizosphere	MHTSGHTRKNSSFSTQGEHQVLLGLEALADGPNLRYATCSTYEVALR
Ga0137415_100936271	3300028536	Vadose Zone Soil	SLHTSKHIRKDSGFSTQDEHRVLLGLEALTKAPNRRYATRST
Ga0247819_100810672	3300028608	Soil	LHTSVHTRKNSSFSTQDEHLVLLGVEALTNVPNLRYATRSTYHTP
Ga0307284_100669923	3300028799	Soil	LHTPRHTRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRSTYQERD
Ga0247826_112479231	3300030336	Soil	LHTSVHTRKNSSFSTQDEHLVLLGVEALTNVPNLRYATRSK
Ga0308199_10891551	3300031094	Soil	HTSRHTRKNSSFSTQDEHPVLLGLEALTAVPNLRYATRSIYL
Ga0308194_102047891	3300031421	Soil	TRKNSGFSTQDEHRVLLGSEALTDAPNLRYATRSN
Ga0308194_102122611	3300031421	Soil	TRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRST
Ga0308194_103018151	3300031421	Soil	HTRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRSIYERQV
Ga0318494_108829381	3300031751	Soil	GVHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSN
Ga0318521_104612112	3300031770	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYATCSI
Ga0318543_102186901	3300031777	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRY
Ga0318550_100573592	3300031797	Soil	VHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSNYS
Ga0306921_103562691	3300031912	Soil	VHTLRHSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSR
Ga0310916_105709431	3300031942	Soil	SLHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPKRRYATRSK
Ga0310913_104540361	3300031945	Soil	VHTLRHSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSIYPKMLI
Ga0310911_107804801	3300032035	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYAT
Ga0318506_100766671	3300032052	Soil	LHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPKRRYATRSNYAEARTSSS
Ga0318505_100551712	3300032060	Soil	VHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSTYRFHGTGRVCNSLM
Ga0318505_102493911	3300032060	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYATCSK
Ga0306924_116019131	3300032076	Soil	HSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSM
Ga0307470_109128952	3300032174	Hardwood Forest Soil	VHTPRHIRKNSGFSTQDEHIVLLGLEALTETPNLRY
Ga0310914_101577841	3300033289	Soil	GLHTSGHTRKHSSFSTQDEHLVLLGLEALTAVPNLRYATRSS
Ga0370548_037832_2_124	3300034644	Soil	RQRAYTRENSGFSTQDEHLGLLGLEALTEALNFHYATRST

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign