NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126376_12683335

Scaffold Ga0126376_12683335


Overview

Basic Information
Taxon OID3300010359 Open in IMG/M
Scaffold IDGa0126376_12683335 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004591Metagenome / Metatranscriptome432Y
F015240Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0126376_126833351F015240GGAGGMATKTDFTDAEWSTLQKGVTGSGMLVSLSDRDFTDTFGE
Ga0126376_126833352F004591GGAGGMRNPPILISVIGFFAALAGFAYLFYGLRVIGFDWFGALGDLPSTEHFGLWGWLAVIVGIIWLAAAFGLWAMQPWA

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