Scaffold Ga0131737_1024092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0131737_1024092

Scaffold Ga0131737_1024092

Overview

Basic Information
Taxon OID	3300009940 Open in IMG/M
Scaffold ID	Ga0131737_1024092 Open in IMG/M
Source Dataset Name	Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1198
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Sponge → Unclassified → Unclassified → Marine → Sponge Microbes In A High Co2 World

Source Dataset Sampling Location
Location Name	Davies Reef, Great Barrier Reef, Australia
Coordinates	Lat. (^o)	-18.833	Long. (^o)	147.683	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131737_10240921	F004237	GAGG	MIDYDIADMMDGVKNMIEASDIRPGDQVLLLADRRSDAASMEAITAGLKFMGAEPMSLVTEPISRYGQVPQAVLEAMHACDVVIWVWPVFITFTPGHRALGRKREESDTQLQEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTASYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVFLSCVQGVAGELPAPMKWVVRDSEVVEAEGGELAEECRQLFKNVPGSNRLVEIMFGYHPKASIRHGVADPMHWELISKMPWVGLGTDRRHPDFRHVDGSVVDQ*

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