NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117911_1042736

Scaffold Ga0117911_1042736


Overview

Basic Information
Taxon OID3300009326 Open in IMG/M
Scaffold IDGa0117911_1042736 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2161
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0117911_10427361F013484GGAGGVNVQIDLSGCTLSIENQAVVDAINKFLVLLPDDADHKAALRLAMVILEAADVAPQADLARAADFAQSRSLRDYKQRLREEGLSGLWDHPIPGRPAITTRTPVEKALFQVILSAVIEEHALPDDVTLADRVNQALSEAQVPEAGRVTAPMVETIRLRWEIRRPTLTQQLQATRQPVAAETDLARLGQTRVGGAFILAMLLVETGWLKLAHLLPMAANYAVTATQWLLTAIFAVIYGVRRAFHLDDVRDIGFALLTGRPRPLTHGTFQHLLRAIPAEDAEKFYQASAHLEVQALGEGTRRISLDGHNLPRYTRVVDLVKGKIGNTGRVLKAEELVLAYDLDGHLWLGLRAYHGTKKLSKGLVEIVRELLNHRGSLKGLLRLFFDKGGYSGQIFLALSEESQVHFYTPAVRYPNNVAQWEQLQESDFDADTFVFDKHADLPVEQRPVYRLADTEMTINVRERNKVVGTVTLRAVVLHDPQGEKPAERWPIVLLTDDYEIDARALLNEFGDHWGQEVAHRIGKHDLHLDILPPGYILKTRRDDQGQLHREVEYDQTAFFLSAWLRCLVFNLMSRFAQAMGGEYIKMWAGTLLRKFIRRP
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