NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10109843

Scaffold Ga0114978_10109843


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10109843 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004451Metagenome / Metatranscriptome437N
F008079Metagenome / Metatranscriptome339Y
F012974Metagenome / Metatranscriptome275N
F018483Metagenome / Metatranscriptome235N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_101098431F018483AGGVERIEMMCQAVEAYIYSKKGVAVKINRLAIISNARQMEMLAYAYTYANGDR*
Ga0114978_101098433F008079N/AMKIKDQFIGAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSELKVVKYKAVKGPIPEPVVTEEDGTEAE*
Ga0114978_101098434F004451AGGAMRPLLDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFIYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLYDKIREDIRYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARSMAEYFKIPVTSAHYWIQEIKTDLKNLRDEN*
Ga0114978_101098435F012974N/ATIVYITRMFTEAEQVIIQQVFSLAEIEQSYKINLIKLKAIKDRLLGYEKECFCSSVRRKIWLKDFKQWYETFT*
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