NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10000521

Scaffold Ga0114978_10000521


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10000521 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32711
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (62.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010766Metagenome / Metatranscriptome299Y
F017301Metagenome / Metatranscriptome241Y
F019320Metagenome / Metatranscriptome230N
F021288Metagenome / Metatranscriptome219Y
F044481Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000052129F017301AGGAGMSNIDTKQLKAMGASYGRSVLGAGLALYMSGVTDPKDLWAALVAAIAPVALRAINPGDKAFGILPTVDAVDTALKAAKAPAKKSAKKAPAKKK*
Ga0114978_1000052152F010766AGGAGMRLKIIKFVVKLLGYEWSGDNLKLPIWYVKEKKKSE*
Ga0114978_100005216F021288GGAMLGYTQKDLADMTYGVWQADLLVNADENPAIHNYLVKAHDFLQGLWAEGYFDNAYDV*
Ga0114978_1000052167F044481AGGAMGKRRTQAELDGLLKFVLGLTLGAILFFTTMGILYALVFVEQPLTGQSENDKMFFNVLGSVATFITGTLAGILIGQSGAKDIMDAQLSNKEMDSKNTLADKKLESEIDEAKARRLNKPDGAMPEEQPVDTDWDK*
Ga0114978_100005219F019320GAGGMHTLHWIAVKAESKQEAFDTVSLSLLPSDEGYRIADWTDWHVVGGGRWSETPYEDSQNMIISYAEQPDEFMKVLSDIKQYRIKYMNEKLVKLDSAFDKLKSDIVDYISNDCRLENDREFDFSRWEIKEAITMLSSEWTPDSGFYDHSEFTSKFQYLEERLDKPEEAKLHYLVPVDFHF*
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