Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10007325 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10007325 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8390
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (43.75%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

8390

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (43.75%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F014487	Metagenome / Metatranscriptome	262	Y
F026543	Metagenome	197	N
F029043	Metagenome	189	Y
F030060	Metagenome	186	N
F079581	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000732512	F014487	N/A	MPLLLLALFLCSCSPKRTDNNSLPNYEMMQAAEDAGKTPSTK*
Ga0114962_1000732513	F029043	N/A	MSKDQKACKALQYLLDEGFISLGYIDGQPSVFLTTSLADAQKAIIGLAKDSADWWK*
Ga0114962_1000732515	F006138	GAG	MPATTIGTAGLVFGLTAEAGIGLIQSFSEARSVEKNEVKNNTGDIVAIGYFNPTTAYSLSVAITGSYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT*
Ga0114962_1000732516	F026543	N/A	MEGIAYWGTTNIKVASAVAGAGGKLRKLDPVSRTIKEDGSSQVTFWFEAGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRETLLGLVKRATSIRVIERGGQTLLVSENATSDQKRAMLRHL*
Ga0114962_100073252	F003049	AGG	MKSTKQIIGCRTAKKGEHTKGLGIITFGKSRPCKTKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALIEMARCKK*
Ga0114962_100073254	F030060	GGCGG	MTKGTIDSEAPQIHWEHLNVKGGRVLDLGCGFWTEAERQEGNGTAKYFLSQKPEFYMGIEINQGDIESLSRQYPEGKFLCQRIESSEQIQGLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFMTWFESIGFECYQYDSVSFCSEISVIYGRLKC*
Ga0114962_100073256	F008741	N/A	MSAKTIKYSQRLGDVLRCLPAAKFLADQGQEVFFDCLPQYHSVFDLVSYVKAGSKGDIIDLEVWPNKYEEYRKSKKTWTDFVYSHSEIKGADKTNIVLDKLDDKPSKELPDKYNLVAPFGISQGYRNNPLEIITKARSEMGKENFYVMTPLDIKIQGLSTYTAPDIEDMAKAIRGADMFWAINSTPIILASAVRKDKNTGFFPQKNEWETDNIFDFEGMIKLD*
Ga0114962_100073259	F079581	N/A	MNQTPQYNVEDAIGDLLAGISGLNVYTTNRIGLRFFPFVTISASVNTQMLGNYTGVYDLSVAVNYSDTAAKITQENFDAEYCAIFEAFYSETPTLATKIQNTIFDTKIHMARISGQSPSIRANKRAWQRGLTMSVICTPSELEDGLRYLNFYQQQNSMYIGVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10007325

Overview

Ecosystem & Geography

Associated Families

Sequences