NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104273_100643

Scaffold Ga0104273_100643


Overview

Basic Information
Taxon OID3300008955 Open in IMG/M
Scaffold IDGa0104273_100643 Open in IMG/M
Source Dataset NameMarine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast

Source Dataset Sampling Location
Location NameNorth Sea off the coast of Germany
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y

Sequences

Protein IDFamilyRBSSequence
Ga0104273_1006432F002629N/AMEVNKAAWEKLKKQIEYHTQQDSEITDVLINYQVKQGKKNYLKLNITIDDFTN*
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