Sample 3300008955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008955

3300008955: Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228

Overview

Basic Information
IMG/M Taxon OID	3300008955 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117982 \| Gp0126721 \| Ga0104273
Sample Name	Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228
Sequencing Status	Permanent Draft
Sequencing Center	Max Planck Institute for Marine Microbiology
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6551951
Sequencing Scaffolds	16
Novel Protein Genes	20
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
Not Available	12
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → planktonic material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Sea off the coast of Germany
Coordinates	Lat. (^o)	54.18194	Long. (^o)	7.9	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F002629	Metagenome / Metatranscriptome	542	Y
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F010726	Metagenome / Metatranscriptome	300	Y
F012505	Metagenome / Metatranscriptome	280	Y
F015798	Metagenome / Metatranscriptome	252	Y
F016738	Metagenome / Metatranscriptome	245	Y
F019836	Metagenome / Metatranscriptome	227	Y
F020179	Metagenome / Metatranscriptome	225	Y
F045764	Metagenome / Metatranscriptome	152	N
F048166	Metagenome / Metatranscriptome	148	N
F051164	Metagenome / Metatranscriptome	144	N
F053569	Metagenome / Metatranscriptome	141	N
F061271	Metagenome / Metatranscriptome	132	N
F062159	Metagenome / Metatranscriptome	131	Y
F086166	Metagenome / Metatranscriptome	111	N
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0104273_100001	All Organisms → Viruses	23014	Open in IMG/M
Ga0104273_100005	Not Available	14398	Open in IMG/M
Ga0104273_100008	Not Available	11716	Open in IMG/M
Ga0104273_100013	Not Available	7325	Open in IMG/M
Ga0104273_100030	Not Available	4177	Open in IMG/M
Ga0104273_100247	Not Available	1305	Open in IMG/M
Ga0104273_100306	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
Ga0104273_100349	All Organisms → Viruses → Predicted Viral	1118	Open in IMG/M
Ga0104273_100370	Not Available	1085	Open in IMG/M
Ga0104273_100432	Not Available	994	Open in IMG/M
Ga0104273_100488	Not Available	935	Open in IMG/M
Ga0104273_100539	Not Available	894	Open in IMG/M
Ga0104273_100564	Not Available	875	Open in IMG/M
Ga0104273_100643	Not Available	822	Open in IMG/M
Ga0104273_101123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	619	Open in IMG/M
Ga0104273_101402	Not Available	549	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104273_100001	Ga0104273_10000111	F020179	MNKSKIKMFFLGLLHLIISPVYIPAMILWEERDDIKDYYSQCFKAVTFRRM*
Ga0104273_100005	Ga0104273_10000523	F012505	MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVREVSDIKYKY*
Ga0104273_100005	Ga0104273_10000527	F007892	MGRLTEISPQQNVVNKINAKADFTHNINNTRLERYTVSTQNVFIGKNPSLFLKDTWKIVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQLAIYDNVSQKVIPVAD*
Ga0104273_100008	Ga0104273_10000813	F000751	MKIYKAVFDTEQQGKDYLLNIGVLIEQDGDEGVEIVFAPTTAAVVYVGKVVEIPGTYGPDGEVITPPVYYPGFAIDVMSSSDLDFGTYAVYPADKSAHSFFGYPKDAEVPPPTTPEDKAKAIIEE*
Ga0104273_100013	Ga0104273_1000138	F015798	MSNMPDFEAGQLVNAVTQLNKDVESLTKTMAKLNDRLAAQEIQLAKGKGMAAGVIVLAAVLGGISSYLMGRM*
Ga0104273_100030	Ga0104273_1000304	F016738	MKDYLPKPKLKSPYKDLINDYQGSVTKATWGESGGLCHIFKSQLNPTARKKYNKERKVA*
Ga0104273_100247	Ga0104273_1002472	F019836	MQKAELELPVKQFHRLYDLLGDILDHEAETNDFNMENNDIELIEDIRTELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKIVEQTSKHGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN*
Ga0104273_100247	Ga0104273_1002473	F045764	MKLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVRKELKKCL*
Ga0104273_100247	Ga0104273_1002474	F062159	MPIIMKNLTEEYVNIDWSGICEDFDLEYGDISPEQSFEIDRALGNINEILHDFINQNK*
Ga0104273_100306	Ga0104273_1003062	F053569	MTDIYLEALSDLHKLWEYSNPYCKKLNAEKHSAYKKAALKIIDAIDRGDT*
Ga0104273_100349	Ga0104273_1003492	F048166	MITKLAGYYSIGGNPVAVSEGLEVSFSDDKELIIYTTEAEFLEAFPELEGDE*
Ga0104273_100370	Ga0104273_1003704	F010726	ALIVLINGTVDVKATSHWHDLNRCKWFAERLTIQGARQRYDTPVMAYCVPKYVEPNKVLIHD*
Ga0104273_100432	Ga0104273_1004324	F005129	NLMHNSVIDLGIFTVKATTHTFLFEAKETDWGADINETELEFYVNNKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEGVVAKRIVKEYPGTDVNF*
Ga0104273_100488	Ga0104273_1004882	F086166	MDYMIKKVDGVGYLPIVLDEFSNEIYRGEYHQNAHDAIDASLSFVDEHYCSDCNMSVYHKDFTWHHPEALRDDQMNQAR*
Ga0104273_100539	Ga0104273_1005392	F000751	MNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFSKDTAAVVYIGKVVKIPATYDADGNIITPAVYYDGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYARNAEVPK*
Ga0104273_100564	Ga0104273_1005641	F005129	MKYKVKIEDRSLSINLMHHSYIDLGLFAVNATTHTFLYSAVKTDWGADINETETEFELNGKRCSYVGFKELYNKLYNNSFVTFEADLIRQ
Ga0104273_100564	Ga0104273_1005643	F061271	MIQELDRVVHQWCDDNDRWMYIEYDRDGIVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFATEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNAKKCCKAISGR*
Ga0104273_100643	Ga0104273_1006432	F002629	MEVNKAAWEKLKKQIEYHTQQDSEITDVLINYQVKQGKKNYLKLNITIDDFTN*
Ga0104273_101123	Ga0104273_1011231	F051164	FLSSQTVFGQWEKQFYVDENGVPTKDSYESLRAWGTFSNDQAKEQDASYIFIKDDASITVKIFEYNTEVPSSSQASFQDVVLTKPDGNIAKIKRVFFTKKGALFFSKGKFCEKDQICLWHLLESWVVNKDKFADFIKQTQNPGTYTMVFDRTVGDTKNNYKATFTL*
Ga0104273_101402	Ga0104273_1014021	F101265	LGGNEISGLKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSELVETN*

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