Scaffold Ga0105745_1014486

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105745_1014486

Scaffold Ga0105745_1014486

Overview

Basic Information
Taxon OID	3300007972 Open in IMG/M
Scaffold ID	Ga0105745_1014486 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1894
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F014849	Metagenome / Metatranscriptome	259	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_10144867	F014849	AGG	MITNLDVLAIIIALLGCLTVMGLFWKQNITQQKEIRRLSVALRTERLKNK*
Ga0105745_10144868	F100416	AGAAGG	MGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN*
Ga0105745_10144869	F000808	GGA	MEYTYSLTTSYDGELINTLRVSDMLEAVRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*

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