NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100416

Metagenome / Metatranscriptome Family F100416

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100416
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence MGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Number of Associated Samples 78
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 86.27 %
% of genes near scaffold ends (potentially truncated) 27.45 %
% of genes from short scaffolds (< 2000 bps) 81.37 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.510 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(24.510 % of family members)
Environment Ontology (ENVO) Unclassified
(86.275 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(74.510 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.89%    β-sheet: 0.00%    Coil/Unstructured: 61.11%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF14025DUF4241 1.96
PF01464SLT 1.96
PF00255GSHPx 0.98
PF01391Collagen 0.98
PF136402OG-FeII_Oxy_3 0.98
PF00085Thioredoxin 0.98
PF06067DUF932 0.98
PF04860Phage_portal 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0386Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxidesDefense mechanisms [V] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.51 %
All OrganismsrootAll Organisms25.49 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035265000|ErSWdraf_F5BXKTZ02JM59CNot Available531Open in IMG/M
2199352005|2199916473Not Available25101Open in IMG/M
3300002294|B570J29584_1000001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales222391Open in IMG/M
3300002298|B570J29599_1001320Not Available1899Open in IMG/M
3300002835|B570J40625_100000124All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales109802Open in IMG/M
3300002835|B570J40625_100000320Not Available77705Open in IMG/M
3300003277|JGI25908J49247_10000306All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes14701Open in IMG/M
3300003277|JGI25908J49247_10027577All Organisms → Viruses → Predicted Viral1632Open in IMG/M
3300003277|JGI25908J49247_10035303All Organisms → Viruses → Predicted Viral1386Open in IMG/M
3300003404|JGI25920J50251_10028515All Organisms → Viruses → Predicted Viral1692Open in IMG/M
3300005581|Ga0049081_10252471Not Available618Open in IMG/M
3300005581|Ga0049081_10304564Not Available548Open in IMG/M
3300005582|Ga0049080_10117132Not Available902Open in IMG/M
3300005583|Ga0049085_10048298Not Available1537Open in IMG/M
3300005584|Ga0049082_10051806All Organisms → Viruses → Predicted Viral1439Open in IMG/M
3300005585|Ga0049084_10081892All Organisms → Viruses → Predicted Viral1176Open in IMG/M
3300007544|Ga0102861_1185963Not Available569Open in IMG/M
3300007555|Ga0102817_1125097Not Available570Open in IMG/M
3300007670|Ga0102862_1164538Not Available570Open in IMG/M
3300007972|Ga0105745_1014486All Organisms → Viruses → Predicted Viral1894Open in IMG/M
3300008116|Ga0114350_1159059Not Available616Open in IMG/M
3300008120|Ga0114355_1033303Not Available3100Open in IMG/M
3300009026|Ga0102829_1045308All Organisms → Viruses → Predicted Viral1312Open in IMG/M
3300009068|Ga0114973_10185139Not Available1143Open in IMG/M
3300009152|Ga0114980_10292622Not Available946Open in IMG/M
3300009152|Ga0114980_10666969Not Available584Open in IMG/M
3300009155|Ga0114968_10289488Not Available919Open in IMG/M
3300009155|Ga0114968_10309590Not Available881Open in IMG/M
3300009159|Ga0114978_10239008All Organisms → Viruses → Predicted Viral1133Open in IMG/M
3300009185|Ga0114971_10635991Not Available587Open in IMG/M
3300010354|Ga0129333_11294167Not Available602Open in IMG/M
3300012012|Ga0153799_1013085Not Available1775Open in IMG/M
3300012013|Ga0153805_1070137Not Available594Open in IMG/M
3300012282|Ga0157136_1008287Not Available639Open in IMG/M
3300012731|Ga0157616_1118971Not Available610Open in IMG/M
3300013004|Ga0164293_10284602All Organisms → Viruses → Predicted Viral1152Open in IMG/M
3300013004|Ga0164293_10432549Not Available880Open in IMG/M
3300017722|Ga0181347_1130542Not Available697Open in IMG/M
3300017722|Ga0181347_1166535Not Available595Open in IMG/M
3300017784|Ga0181348_1126928Not Available975Open in IMG/M
3300018868|Ga0187844_10334776Not Available627Open in IMG/M
3300019784|Ga0181359_1077270All Organisms → Viruses → Predicted Viral1253Open in IMG/M
3300019784|Ga0181359_1255346Not Available529Open in IMG/M
3300020048|Ga0207193_1789644Not Available604Open in IMG/M
3300020141|Ga0211732_1262749Not Available699Open in IMG/M
3300020159|Ga0211734_10504102Not Available679Open in IMG/M
3300020159|Ga0211734_10742507Not Available584Open in IMG/M
3300020159|Ga0211734_10946129Not Available604Open in IMG/M
3300020161|Ga0211726_10266437Not Available765Open in IMG/M
3300020496|Ga0208230_1014628Not Available773Open in IMG/M
3300020499|Ga0208084_1009048All Organisms → Viruses → Predicted Viral1202Open in IMG/M
3300020513|Ga0208090_1001148Not Available4904Open in IMG/M
3300020515|Ga0208234_1035156Not Available562Open in IMG/M
3300020527|Ga0208232_1000001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales112505Open in IMG/M
3300020527|Ga0208232_1036911Not Available651Open in IMG/M
3300020528|Ga0208224_1024175Not Available831Open in IMG/M
3300020532|Ga0208601_1037594Not Available696Open in IMG/M
3300020533|Ga0208364_1025900Not Available809Open in IMG/M
3300020542|Ga0208857_1012325Not Available1456Open in IMG/M
3300023174|Ga0214921_10007013Not Available15164Open in IMG/M
3300023174|Ga0214921_10030725Not Available5275Open in IMG/M
3300027586|Ga0208966_1047968Not Available1222Open in IMG/M
3300027608|Ga0208974_1000577All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes14957Open in IMG/M
3300027608|Ga0208974_1028106All Organisms → Viruses → Predicted Viral1709Open in IMG/M
3300027608|Ga0208974_1065369All Organisms → Viruses → Predicted Viral1017Open in IMG/M
3300027608|Ga0208974_1068938Not Available984Open in IMG/M
3300027608|Ga0208974_1174539Not Available532Open in IMG/M
3300027621|Ga0208951_1061789All Organisms → Viruses → Predicted Viral1072Open in IMG/M
3300027621|Ga0208951_1192830Not Available512Open in IMG/M
3300027627|Ga0208942_1045203Not Available1364Open in IMG/M
3300027659|Ga0208975_1157482Not Available630Open in IMG/M
3300027707|Ga0209443_1323368Not Available507Open in IMG/M
(restricted) 3300027730|Ga0247833_1060499Not Available1939Open in IMG/M
3300027744|Ga0209355_1037940Not Available2396Open in IMG/M
3300027744|Ga0209355_1380098Not Available509Open in IMG/M
3300027754|Ga0209596_1037481All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4032659Open in IMG/M
3300027785|Ga0209246_10290854Not Available628Open in IMG/M
3300027892|Ga0209550_10429376Not Available810Open in IMG/M
3300027973|Ga0209298_10000029Not Available83754Open in IMG/M
3300027973|Ga0209298_10118614All Organisms → Viruses → Predicted Viral1139Open in IMG/M
3300028025|Ga0247723_1002535Not Available9659Open in IMG/M
3300028394|Ga0304730_1231663Not Available677Open in IMG/M
(restricted) 3300029268|Ga0247842_10073584All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4032189Open in IMG/M
(restricted) 3300029268|Ga0247842_10256514Not Available954Open in IMG/M
3300032116|Ga0315903_10856262Not Available656Open in IMG/M
3300033981|Ga0334982_0276193Not Available799Open in IMG/M
3300033992|Ga0334992_0459543Not Available559Open in IMG/M
3300033993|Ga0334994_0350786Not Available730Open in IMG/M
3300033996|Ga0334979_0509598Not Available650Open in IMG/M
3300034062|Ga0334995_0470106Not Available765Open in IMG/M
3300034064|Ga0335001_0432737Not Available703Open in IMG/M
3300034064|Ga0335001_0604061Not Available576Open in IMG/M
3300034071|Ga0335028_0071079All Organisms → Viruses → Predicted Viral2321Open in IMG/M
3300034071|Ga0335028_0141647All Organisms → Viruses → Predicted Viral1538Open in IMG/M
3300034101|Ga0335027_0023991Not Available5149Open in IMG/M
3300034101|Ga0335027_0716494Not Available591Open in IMG/M
3300034102|Ga0335029_0374403Not Available869Open in IMG/M
3300034106|Ga0335036_0037284All Organisms → Viruses → Predicted Viral3791Open in IMG/M
3300034108|Ga0335050_0090277All Organisms → Viruses → Predicted Viral1797Open in IMG/M
3300034111|Ga0335063_0360551Not Available748Open in IMG/M
3300034116|Ga0335068_0230791Not Available954Open in IMG/M
3300034117|Ga0335033_0586745Not Available521Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater24.51%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic15.69%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake13.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater11.76%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake10.78%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.84%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater3.92%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.92%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.98%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.98%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.98%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.98%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2035265000Freshwater microbial communities from Swedish Lakes - surface of Lake ErkenEnvironmentalOpen in IMG/M
2199352005Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnionEnvironmentalOpen in IMG/M
3300002294Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002298Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003404Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMDEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007670Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3EnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012282Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5mEnvironmentalOpen in IMG/M
3300012731Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES145 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300018868Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020496Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020499Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020513Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020515Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020527Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020528Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020532Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020533Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020542Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027621Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027627Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027707Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300029268 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19mEnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033992Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034108Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034117Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ErSWdraft_125917802035265000FreshwaterMGKVKEALMDIMEHELCYGYGWLYYGNNVDFDSEACECNPYAISADEIMELRGL
22001049322199352005FreshwaterMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
B570J29584_10000011663300002294FreshwaterMGKVKSTIMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN*
B570J29599_100132073300002298FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACEXNPYAISADEIMELKGL*
B570J40625_100000124123300002835FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL*
B570J40625_100000320933300002835FreshwaterMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN*
JGI25908J49247_1000030693300003277Freshwater LakeMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
JGI25908J49247_1002757743300003277Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN*
JGI25908J49247_1003530333300003277Freshwater LakeMAKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPHALSADEVMEWKGL*
JGI25920J50251_1002851553300003404Freshwater LakeALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
Ga0049081_1025247133300005581Freshwater LenticMGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN*
Ga0049081_1030456423300005581Freshwater LenticMGKVKTALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
Ga0049080_1011713243300005582Freshwater LenticMGKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPHAISADELMDWKLN*
Ga0049085_1004829863300005583Freshwater LenticMGKVKSTMMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN*
Ga0049082_1005180653300005584Freshwater LenticMAKVKEALMDILEHDLCYGYGWLYSGNNVDFESEACECNPYALSADEVMEWKGL*
Ga0049084_1008189213300005585Freshwater LenticLMDILEHDLCYGYGWLYSGNNVDFESEACECNPYALSADEVMEWKGL*
Ga0102861_118596313300007544EstuarineMGKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPYAISADELMDWKLN*
Ga0102817_112509733300007555EstuarineMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYSISADELMDWKLN*
Ga0102862_116453823300007670EstuarineMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELIDWKLN*
Ga0105745_101448683300007972Estuary WaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN*
Ga0114350_115905933300008116Freshwater, PlanktonMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN*
Ga0114355_103330353300008120Freshwater, PlanktonMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEIMEWKGL*
Ga0102829_104530863300009026EstuarineMAKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
Ga0114973_1018513923300009068Freshwater LakeMGKVKSTMMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADELIDWKLN*
Ga0114980_1029262213300009152Freshwater LakeSTMMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADELIDWKLN*
Ga0114980_1066696933300009152Freshwater LakeMGKVKSTMMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN*
Ga0114968_1028948843300009155Freshwater LakeMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPYAISADELMDWKLN*
Ga0114968_1030959033300009155Freshwater LakeMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
Ga0114978_1023900833300009159Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELIDWKLN*
Ga0114971_1063599113300009185Freshwater LakeGKMGKVKSTMMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADELIDWKLN*
Ga0129333_1129416713300010354Freshwater To Marine Saline GradientMGKVKSTIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN*
Ga0153799_101308593300012012FreshwaterMGKVKSTIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISAD
Ga0153805_107013723300012013Surface IceMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPYAISADELMDWKLN*
Ga0157136_100828733300012282FreshwaterIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELIDWKLN*
Ga0157616_111897113300012731FreshwaterMGKVKTALMDILEHEYCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN*
Ga0164293_1028460253300013004FreshwaterMGKVKSTIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN*
Ga0164293_1043254943300013004FreshwaterMGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISA
Ga0181347_113054233300017722Freshwater LakeMGKVKTALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISA
Ga0181347_116653513300017722Freshwater LakeRKKEQMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELIDWKLN
Ga0181348_112692823300017784Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN
Ga0187844_1033477613300018868FreshwaterMAKVKEALMDILEHDLCYGYGWLYSGNNVDFESEACECNPYALSADEVMEWKGL
Ga0181359_107727033300019784Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
Ga0181359_125534623300019784Freshwater LakeMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELM
Ga0207193_178964413300020048Freshwater Lake SedimentMAKVKQAFTEILEHVDCYGYGWLYWGSGENFTSEVCECNPYAISADEIMELRGLXXXXX
Ga0211732_126274913300020141FreshwaterMGKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPYAISADELMDWKLN
Ga0211734_1050410213300020159FreshwaterMAKVKEALMNILEHDLCYGYGWLYSGNNVDFDSETCECNPHAISADDVMEWKGL
Ga0211734_1074250713300020159FreshwaterMGKVKEALMNILEHDLCYGYGWLYHGNNVDFDSEACECNPYAISADELMDWKLN
Ga0211734_1094612923300020159FreshwaterMGKVKSTIMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADNLID
Ga0211726_1026643723300020161FreshwaterMGKVKSTIMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADNLIDWKLN
Ga0208230_101462813300020496FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAIS
Ga0208084_100904813300020499FreshwaterMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISA
Ga0208090_100114893300020513FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL
Ga0208234_103515623300020515FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0208232_10000011143300020527FreshwaterMGKVKSTIMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN
Ga0208232_103691123300020527FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEIMEWKGL
Ga0208224_102417543300020528FreshwaterMAKVKQAFTEILEHVDCYGYGWLYWGSGENFTSEVCECNPYAISADEIMELRGL
Ga0208601_103759413300020532FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELRGL
Ga0208364_102590043300020533FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEIMELKGL
Ga0208857_101232563300020542FreshwaterMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMEWKGL
Ga0214921_1000701373300023174FreshwaterMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPYAISADELMDWKLN
Ga0214921_10030725113300023174FreshwaterMGKVKSTIMDILEHEYCYGYGWLYSGNNVDFDSEACECNPYAISADELMDWKLN
Ga0208966_104796853300027586Freshwater LenticMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLI
Ga0208974_100057763300027608Freshwater LenticMGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0208974_102810623300027608Freshwater LenticMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN
Ga0208974_106536913300027608Freshwater LenticKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPHAISADELMDWKLN
Ga0208974_106893823300027608Freshwater LenticMGKVKSTIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN
Ga0208974_117453923300027608Freshwater LenticMGKVKTALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN
Ga0208951_106178933300027621Freshwater LenticMAKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPHALSADEVMEWKGL
Ga0208951_119283013300027621Freshwater LenticMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELIDWKLN
Ga0208942_104520363300027627Freshwater LenticMGKVKSTMMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
Ga0208975_115748233300027659Freshwater LenticMGKVKSTIMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0209443_132336813300027707Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYSISADELMDWKLN
(restricted) Ga0247833_106049963300027730FreshwaterMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISSEELVDWKLN
Ga0209355_103794013300027744Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYSISA
Ga0209355_138009813300027744Freshwater LakeMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
Ga0209596_103748173300027754Freshwater LakeMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN
Ga0209246_1029085423300027785Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYSISADELIDWKLN
Ga0209550_1042937613300027892Freshwater LakeMGKVKSTIMDILEHDLCYGYGWIYQGNNVDFDSEACECNPYAISADE
Ga0209298_100000291003300027973Freshwater LakeMGKVKSTMMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN
Ga0209298_1011861413300027973Freshwater LakeSTMMDILECDSCYGYGWQFAGNAIDYDVWACECNPYNISADELIDWKLN
Ga0247723_1002535193300028025Deep Subsurface SedimentMGKVKEALMDILEHELCYGYGWLYQGNGIDFDSEACECNPYAISADEIMELKGL
Ga0304730_123166333300028394Freshwater LakeYNERKQMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN
(restricted) Ga0247842_1007358463300029268FreshwaterMAKVKETIMNILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELMDWKLN
(restricted) Ga0247842_1025651443300029268FreshwaterMGKVKEALMDILEHDLCYGYGWLYHGNNVDFDSEACECNPYAISADELMDWKLN
Ga0315903_1085626223300032116FreshwaterMGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEIMEWKGL
Ga0334982_0276193_524_6883300033981FreshwaterMGKVKEALMDILEHDLCYGYGWLYQGNNVDFDSEVCECNPYAISADEIMEWKGL
Ga0334992_0459543_415_5583300033992FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEI
Ga0334994_0350786_1_1653300033993FreshwaterMGKVKSTIMDILEHEYCYGYGWIYQGNNVDFDSEACECNPYAISADELIDWKLN
Ga0334979_0509598_3_1463300033996FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADEL
Ga0334995_0470106_45_2093300034062FreshwaterMGKVKTALMDILEHEYCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN
Ga0335001_0432737_459_6233300034064FreshwaterMGKVKSTIMDILEHDLCYGYGWIYQGNAIDFDSEACECNPYAISADELMDWKLN
Ga0335001_0604061_1_1353300034064FreshwaterILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0335028_0071079_1047_12113300034071FreshwaterMGKVKATLMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELIDWKLN
Ga0335028_0141647_1_1443300034071FreshwaterLMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0335027_0023991_2695_28593300034101FreshwaterMGKVKEALMDILEHDLCYGYGWLYSGNGIDFDSEACECNPYAISADEIMDWKLN
Ga0335027_0716494_58_2223300034101FreshwaterMGKVKEAVMDILEHELCYGYGWIYQGNGIDFDSEACECNPYAISADELMDWKLN
Ga0335029_0374403_470_6343300034102FreshwaterMGKVKEALMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELRGL
Ga0335036_0037284_1032_11963300034106FreshwaterMGKVKEALIDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN
Ga0335050_0090277_1220_13843300034108FreshwaterMGKVKEALMDILEHDLCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN
Ga0335063_0360551_1_1323300034111FreshwaterMGKVKEALMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAIS
Ga0335068_0230791_2_1603300034116FreshwaterKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPYAISADELMDWKLN
Ga0335033_0586745_2_1393300034117FreshwaterMGKVKEALMDILEHDLCYGYGWLYSGNNVDFDSEACECNPYAISAD


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