NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104349_1030640

Scaffold Ga0104349_1030640


Overview

Basic Information
Taxon OID3300007281 Open in IMG/M
Scaffold IDGa0104349_1030640 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India ? 2ppm of oxygen, sample B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterXcelris labs Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1689
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Aeration Tank Of Activated Sludge Process → Activated Sludge Process Metagenomes

Source Dataset Sampling Location
Location NameNagpur, India
CoordinatesLat. (o)21.1458004Long. (o)79.0881546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018391Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0104349_10306401F018391N/AARHLEWVAREIDEWCAPLRLAREPSSVASVYVDLGSREGLKRRTPAPLEGRVLFLDTRPLHAMLMQNVVVIEQKIRHQPLSDRTQRRSEQLGLLAKLAAQVDPEFRPFARRGERTAAVGHVDAIVGFAKISGFLHEEERDPLPRVEPGKSFGGTMEIAVFGHARNEAERRRDLARARLATWGAAGGPWEVKDVSQTGFRLIAPMSAASAVTLNTLASIRPWGHAFWTLGIVRRMKRLTSDRAEIGLQVIANTLIGVELVEQRRSSSAGGADYSVEGEHSTLDGRTFHGLFLALRKREGGSAVQSLIVPAVEYQPSRRFRMQTARSIVPIRFGRLIEQQPDWIWAAVEPLDLSGTGDLSARTTMSGLGLSPH*
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