| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300007281 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118053 | Gp0127445 | Ga0104349 |
| Sample Name | Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India ? 2ppm of oxygen, sample B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Xcelris labs Ltd |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 76313382 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Activated Sludge Process Metagenomes |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Aeration Tank Of Activated Sludge Process → Activated Sludge Process Metagenomes |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Nagpur, India | |||||||
| Coordinates | Lat. (o) | 21.1458004 | Long. (o) | 79.0881546 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001844 | Metagenome / Metatranscriptome | 627 | Y |
| F002505 | Metagenome / Metatranscriptome | 553 | Y |
| F007965 | Metagenome / Metatranscriptome | 341 | Y |
| F016311 | Metagenome / Metatranscriptome | 248 | Y |
| F018391 | Metagenome / Metatranscriptome | 235 | Y |
| F018949 | Metagenome / Metatranscriptome | 232 | Y |
| F025775 | Metagenome | 200 | Y |
| F064484 | Metagenome / Metatranscriptome | 128 | Y |
| F064603 | Metagenome / Metatranscriptome | 128 | Y |
| F064753 | Metagenome / Metatranscriptome | 128 | Y |
| F069722 | Metagenome / Metatranscriptome | 123 | Y |
| F076350 | Metagenome / Metatranscriptome | 118 | Y |
| F082508 | Metagenome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0104349_1007519 | Not Available | 543 | Open in IMG/M |
| Ga0104349_1007597 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2173 | Open in IMG/M |
| Ga0104349_1013107 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 537 | Open in IMG/M |
| Ga0104349_1026674 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1175 | Open in IMG/M |
| Ga0104349_1030640 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp. | 1689 | Open in IMG/M |
| Ga0104349_1036418 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1381 | Open in IMG/M |
| Ga0104349_1038011 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1513 | Open in IMG/M |
| Ga0104349_1041326 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 623 | Open in IMG/M |
| Ga0104349_1046939 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2277 | Open in IMG/M |
| Ga0104349_1058353 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 515 | Open in IMG/M |
| Ga0104349_1071518 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium | 1890 | Open in IMG/M |
| Ga0104349_1087169 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus | 1483 | Open in IMG/M |
| Ga0104349_1099486 | Not Available | 549 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0104349_1007519 | Ga0104349_10075192 | F064484 | VSAIVVEGASKHWTTGDGKVRAVDRLSFSLDAGTLNVLLGPSGC |
| Ga0104349_1007597 | Ga0104349_10075974 | F064753 | MDIQQAMKNPARTFGTPEALEQATGLSDSQKRAILLQWKDQLHQLLAADDEHMLRAGAQAGANGECLRRVIDVLTRLR* |
| Ga0104349_1013107 | Ga0104349_10131071 | F082508 | MSSPVPSPRDEPAVTGLQEQLALIEPQNLARLEQPLRHGFADRSTARKGLEIAAGVAIADRLGTISQKQGRQIGPNGYKMIVWLGSRWLQMEAPGNTAVPFTQYRILHDFGWQDNGKPARQALRQTLLNLQEARWEGEVNDPVTGRKTHEDHFGIIDRIIWPIV |
| Ga0104349_1026674 | Ga0104349_10266742 | F001844 | VPPQHLARWLTRLLALLLALLTLTPAAHAERWAGELPAGDVLALQKEALELVAGFPGARRDVGPAQVEALLRIDARLEPALVQITRQYTANYQKSSSVESRLWHAAFDLVKAFIGAYQLALKAGYPRAENRRWRAILPWVLVRLARHRGLDGRYRLFRYSHWIPAQWRDFHELYEFARMRGWQREQLVLGGGGFSQPGVTLEQEYIQTLLLMRLDSGNFTPDQVEWISKQLGDWAPTLALAPPPGEGAGFFVDLTGAQGLRRRDRPGVGGRLLYLDLAPVYARVVERMRWLPEQDDATTEAGDLPPREQRLLLMRLAALYGPEAIAQAPRAERFRTEAQVR |
| Ga0104349_1030640 | Ga0104349_10306401 | F018391 | ARHLEWVAREIDEWCAPLRLAREPSSVASVYVDLGSREGLKRRTPAPLEGRVLFLDTRPLHAMLMQNVVVIEQKIRHQPLSDRTQRRSEQLGLLAKLAAQVDPEFRPFARRGERTAAVGHVDAIVGFAKISGFLHEEERDPLPRVEPGKSFGGTMEIAVFGHARNEAERRRDLARARLATWGAAGGPWEVKDVSQTGFRLIAPMSAASAVTLNTLASIRPWGHAFWTLGIVRRMKRLTSDRAEIGLQVIANTLIGVELVEQRRSSSAGGADYSVEGEHSTLDGRTFHGLFLALRKREGGSAVQSLIVPAVEYQPSRRFRMQTARSIVPIRFGRLIEQQPDWIWAAVEPLDLSGTGDLSARTTMSGLGLSPH* |
| Ga0104349_1036418 | Ga0104349_10364183 | F076350 | MAASLQKIISGRYAGRNGPIALVLPDGGRLALSAAPEVEVVARTWRG |
| Ga0104349_1038011 | Ga0104349_10380113 | F002505 | MFEFLTSPGKDTTDPLVSAKTVSVWLRQLPALDVIGRQQHVMKAFDGMRLSRKPVDPARVLALQFLDSALGADRRQLIKQYVENAETSPKLAERLWQAVHELTQGFSAAYQGALEEGLSQAANSRWKPLIPFLFTRFTHYAGTDAKLRVYRYERWIPARWADLHRTFLRATELGVERAPTSLAGAGANATHWTLEQEYLYTQLVHQLNTGNMTPGEIDWACSQLRAWSRRLALDAVPRSPEGFFVDIAGRTGLQRRTGNDSGSMLRYLDTSPLADQIDRAVAALH |
| Ga0104349_1041326 | Ga0104349_10413262 | F064603 | MTIKKFDYSKSTEDIFYKVIYPLYPREFLFGSNYEQFAFLVSSNFILNATQWEYILEHWEQKESILIIETK* |
| Ga0104349_1046939 | Ga0104349_10469393 | F016311 | MIIGALLVAVGVLGYMYWDSEHNTVLKAPGVEIKKN* |
| Ga0104349_1058353 | Ga0104349_10583531 | F069722 | RRVRLNAELDPKAKKERPDLKKGAAHEKALGHRSGAALQE* |
| Ga0104349_1071518 | Ga0104349_10715186 | F007965 | SKNKKETRGCKRPLSGRKKAEYESKTIAFRVRVEFVEPIKKMVKDYVSERLKGDA* |
| Ga0104349_1087169 | Ga0104349_10871693 | F025775 | MKQLLTFQGFPMVVVTGLIIWSWISILSVLIGSFF* |
| Ga0104349_1099486 | Ga0104349_10994861 | F018949 | SPPELPEWLRGDPVAEHLRAEGRTVTRAAWLEAAYGSSSETVLMFDKEMREWVRRYFPADPHEPVC* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |