NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098037_1019296

Scaffold Ga0098037_1019296


Overview

Basic Information
Taxon OID3300006737 Open in IMG/M
Scaffold IDGa0098037_1019296 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2557
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F004850Metagenome / Metatranscriptome421Y
F034346Metagenome / Metatranscriptome175Y
F092085Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0098037_10192962F001740N/AMYNVNNPSNWSWSKAFDEMAKSIHESEMTQQCINHVLDYPGEANGVWMSLNKTQQDNVYEILNQVI*
Ga0098037_10192964F004850N/AMIDNYEFEIYYGDIEEPLYLTNNKNYICDDMRDFMEELGIIMEEVIYKVKTI*
Ga0098037_10192967F034346N/AMIKALKIIAIKAVEEKMLKIYATIMTTVFLAIWIPTMAIVLKNIFTQVILPIFK*
Ga0098037_10192968F092085N/AMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTV
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