NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092085

Metagenome / Metatranscriptome Family F092085

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092085
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 48 residues
Representative Sequence MKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFN
Number of Associated Samples 93
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 96.26 %
% of genes from short scaffolds (< 2000 bps) 89.72 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (78.505 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(22.430 % of family members)
Environment Ontology (ENVO) Unclassified
(72.897 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.178 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 77.55%    β-sheet: 0.00%    Coil/Unstructured: 22.45%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00118Cpn60_TCP1 0.93
PF13884Peptidase_S74 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A78.50 %
All OrganismsrootAll Organisms21.50 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001450|JGI24006J15134_10198703Not Available613Open in IMG/M
3300005837|Ga0078893_10072871Not Available20953Open in IMG/M
3300006029|Ga0075466_1100089Not Available787Open in IMG/M
3300006421|Ga0082247_10898873Not Available533Open in IMG/M
3300006484|Ga0070744_10219524Not Available539Open in IMG/M
3300006737|Ga0098037_1019296Not Available2557Open in IMG/M
3300006752|Ga0098048_1056150Not Available1228Open in IMG/M
3300006916|Ga0070750_10037969All Organisms → Viruses → Predicted Viral2374Open in IMG/M
3300006916|Ga0070750_10108107All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1284Open in IMG/M
3300006919|Ga0070746_10226266Not Available881Open in IMG/M
3300006921|Ga0098060_1049112Not Available1251Open in IMG/M
3300006921|Ga0098060_1086906Not Available893Open in IMG/M
3300006922|Ga0098045_1147814Not Available542Open in IMG/M
3300006924|Ga0098051_1052037All Organisms → Viruses → Predicted Viral1131Open in IMG/M
3300006924|Ga0098051_1079495Not Available887Open in IMG/M
3300006924|Ga0098051_1094767Not Available803Open in IMG/M
3300007346|Ga0070753_1191510Not Available760Open in IMG/M
3300007540|Ga0099847_1185903Not Available609Open in IMG/M
3300007862|Ga0105737_1094976Not Available750Open in IMG/M
3300009071|Ga0115566_10444125Not Available742Open in IMG/M
3300009086|Ga0102812_10650654Not Available579Open in IMG/M
3300009495|Ga0115571_1433499Not Available508Open in IMG/M
3300009496|Ga0115570_10305429Not Available689Open in IMG/M
3300009497|Ga0115569_10432192Not Available565Open in IMG/M
3300009608|Ga0115100_10486836Not Available1019Open in IMG/M
3300010150|Ga0098056_1127684Not Available862Open in IMG/M
3300010150|Ga0098056_1139301Not Available821Open in IMG/M
3300010150|Ga0098056_1298258Not Available531Open in IMG/M
3300010151|Ga0098061_1067857Not Available1362Open in IMG/M
3300010430|Ga0118733_102962318Not Available932Open in IMG/M
3300011261|Ga0151661_1149013Not Available542Open in IMG/M
3300012284|Ga0116696_1058416Not Available684Open in IMG/M
3300013099|Ga0164315_11269956Not Available580Open in IMG/M
3300013101|Ga0164313_11259095Not Available598Open in IMG/M
3300013103|Ga0164318_10946159Not Available712Open in IMG/M
3300014903|Ga0164321_10731196Not Available519Open in IMG/M
3300017709|Ga0181387_1055983Not Available787Open in IMG/M
3300017709|Ga0181387_1074855Not Available682Open in IMG/M
3300017713|Ga0181391_1139814Not Available538Open in IMG/M
3300017714|Ga0181412_1126201Not Available587Open in IMG/M
3300017728|Ga0181419_1008990Not Available2985Open in IMG/M
3300017740|Ga0181418_1021542All Organisms → Viruses → Predicted Viral1680Open in IMG/M
3300017741|Ga0181421_1077627Not Available870Open in IMG/M
3300017742|Ga0181399_1035296All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300017742|Ga0181399_1084598Not Available795Open in IMG/M
3300017743|Ga0181402_1055632All Organisms → Viruses → Predicted Viral1060Open in IMG/M
3300017743|Ga0181402_1078407Not Available866Open in IMG/M
3300017746|Ga0181389_1092887Not Available837Open in IMG/M
3300017750|Ga0181405_1151106Not Available574Open in IMG/M
3300017752|Ga0181400_1079208Not Available984Open in IMG/M
3300017752|Ga0181400_1109775Not Available804Open in IMG/M
3300017755|Ga0181411_1092305Not Available899Open in IMG/M
3300017758|Ga0181409_1191665Not Available591Open in IMG/M
3300017763|Ga0181410_1171261Not Available604Open in IMG/M
3300017767|Ga0181406_1196636Not Available599Open in IMG/M
3300017769|Ga0187221_1104578Not Available863Open in IMG/M
3300017771|Ga0181425_1047632All Organisms → Viruses → Predicted Viral1398Open in IMG/M
3300017779|Ga0181395_1180328Not Available660Open in IMG/M
3300017781|Ga0181423_1219136Not Available716Open in IMG/M
3300017781|Ga0181423_1358839Not Available530Open in IMG/M
3300021335|Ga0213867_1064916All Organisms → Viruses → Predicted Viral1364Open in IMG/M
3300021389|Ga0213868_10573929Not Available594Open in IMG/M
3300021959|Ga0222716_10231216Not Available1152Open in IMG/M
3300022053|Ga0212030_1026725Not Available793Open in IMG/M
3300022072|Ga0196889_1056987Not Available750Open in IMG/M
3300022167|Ga0212020_1064188Not Available621Open in IMG/M
3300022168|Ga0212027_1053342Not Available504Open in IMG/M
3300022178|Ga0196887_1073355All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.817Open in IMG/M
3300022200|Ga0196901_1235338Not Available574Open in IMG/M
3300023696|Ga0228687_1003686All Organisms → Viruses → Predicted Viral1534Open in IMG/M
3300024248|Ga0228676_1077634Not Available735Open in IMG/M
(restricted) 3300024264|Ga0233444_10196064Not Available936Open in IMG/M
3300024316|Ga0228654_1010744All Organisms → Viruses → Predicted Viral1223Open in IMG/M
3300024329|Ga0228631_1128900Not Available572Open in IMG/M
3300024332|Ga0228659_1027279All Organisms → Viruses → Predicted Viral1317Open in IMG/M
3300024334|Ga0228671_1025402Not Available1688Open in IMG/M
3300024346|Ga0244775_11315003Not Available559Open in IMG/M
3300024420|Ga0228632_1094592Not Available700Open in IMG/M
3300025085|Ga0208792_1059886Not Available702Open in IMG/M
3300025098|Ga0208434_1039349Not Available1076Open in IMG/M
3300025099|Ga0208669_1006151All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3623Open in IMG/M
3300025102|Ga0208666_1030887All Organisms → Viruses → Predicted Viral1621Open in IMG/M
3300025102|Ga0208666_1080853Not Available837Open in IMG/M
3300025103|Ga0208013_1036471Not Available1382Open in IMG/M
3300025108|Ga0208793_1053202All Organisms → Viruses → Predicted Viral1240Open in IMG/M
3300025120|Ga0209535_1101131All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300025759|Ga0208899_1026167Not Available2817Open in IMG/M
3300025816|Ga0209193_1134760Not Available585Open in IMG/M
3300025849|Ga0209603_1153944Not Available932Open in IMG/M
3300025849|Ga0209603_1230135Not Available688Open in IMG/M
3300025886|Ga0209632_10557947Not Available512Open in IMG/M
3300027186|Ga0208797_1053736Not Available506Open in IMG/M
3300027845|Ga0209271_10073422All Organisms → Viruses → Predicted Viral1419Open in IMG/M
3300027858|Ga0209013_10382564Not Available784Open in IMG/M
(restricted) 3300027861|Ga0233415_10005249All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5255Open in IMG/M
(restricted) 3300027996|Ga0233413_10247194Not Available758Open in IMG/M
3300028136|Ga0228608_1040462All Organisms → Viruses → Predicted Viral1362Open in IMG/M
3300028273|Ga0228640_1019577All Organisms → Viruses → Predicted Viral1313Open in IMG/M
3300028297|Ga0228617_1010843All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3398Open in IMG/M
3300028297|Ga0228617_1061320Not Available1019Open in IMG/M
3300029448|Ga0183755_1009551All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3924Open in IMG/M
3300031851|Ga0315320_10269862Not Available1225Open in IMG/M
3300032047|Ga0315330_10201208Not Available1288Open in IMG/M
3300032073|Ga0315315_10041312Not Available4286Open in IMG/M
3300032088|Ga0315321_10829109Not Available523Open in IMG/M
3300034375|Ga0348336_161462Not Available650Open in IMG/M
3300034418|Ga0348337_023858All Organisms → Viruses → Predicted Viral2995Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater22.43%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine19.63%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous14.02%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater12.15%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.54%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.74%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment3.74%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.80%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.87%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.87%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.87%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.87%
SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Sediment0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.93%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.93%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.93%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.93%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.93%
MarineEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine0.93%
Beach SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006421Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011261Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02EnvironmentalOpen in IMG/M
3300012284Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2EnvironmentalOpen in IMG/M
3300013099Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cmEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300013103Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cmEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023696Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024248Seawater microbial communities from Monterey Bay, California, United States - 48D_rEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024316Seawater microbial communities from Monterey Bay, California, United States - 66DEnvironmentalOpen in IMG/M
3300024329Seawater microbial communities from Monterey Bay, California, United States - 39DEnvironmentalOpen in IMG/M
3300024332Seawater microbial communities from Monterey Bay, California, United States - 73DEnvironmentalOpen in IMG/M
3300024334Seawater microbial communities from Monterey Bay, California, United States - 89DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024420Seawater microbial communities from Monterey Bay, California, United States - 40DEnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027186Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes)EnvironmentalOpen in IMG/M
3300027845Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300027858Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028136Seawater microbial communities from Monterey Bay, California, United States - 9DEnvironmentalOpen in IMG/M
3300028273Seawater microbial communities from Monterey Bay, California, United States - 51DEnvironmentalOpen in IMG/M
3300028297Seawater microbial communities from Monterey Bay, California, United States - 18DEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032047Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24006J15134_1019870333300001450MarineMKITNEEKDEITWRVVDSLYEKLANELEYELENHNDFTETNNAYMDLFNEMTI
Ga0078893_10072871243300005837Marine Surface WaterMQINKQDKQDIILKVVDSLYEKLANELEYELQEHENNTETDDAYFDLFNKMTIDIVKEMKKQLFV*
Ga0075466_110008943300006029AqueousMKITNEEKDEITWRVVDSLYEKLASELEYELQEHENFPETNDAYFDLFNE
Ga0082247_1089887333300006421SedimentMKITNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAY
Ga0070744_1021952433300006484EstuarineMKLTNEEKEEITWRVTDSLYEKLYDELEYWLQEHENFPESND
Ga0098037_101929683300006737MarineMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTV
Ga0098048_105615053300006752MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIKIVK
Ga0070750_1003796963300006916AqueousMQINKQDKQDIILKVVDSLYEKLANELEYELQEHENNTETDNAYFDLFNEMTIDIVKEMKKQLFV*
Ga0070750_1010810763300006916AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHNNFTETNDEFLDLFNEMTIKIV
Ga0070746_1022626613300006919AqueousMKLTNKEKLKITWRVVDSLYEKLASELEYELQEHESFPET
Ga0098060_104911253300006921MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIKI
Ga0098060_108690643300006921MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFNEMTIKIVK
Ga0098045_114781433300006922MarineMKLTNKEKDEITWRVVDSLYEKLANELEYELQEHE
Ga0098051_105203713300006924MarineMKLTNEEKLKITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIKIVK
Ga0098051_107949553300006924MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELEEHDDFTETNDAYF
Ga0098051_109476713300006924MarineMKLTNNEKLKITWRVVDSLYEKLANELEYELQEHENF
Ga0070753_119151013300007346AqueousMKLTNKEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFN
Ga0099847_118590333300007540AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFP
Ga0105737_109497613300007862Estuary WaterMKLTKEEKEEITWRVTDSLYEKLANELEYELQENENFQETNDAYMDLFNEMTVK
Ga0115566_1044412533300009071Pelagic MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEM
Ga0102812_1065065413300009086EstuarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQENENFQETNDAYMDLFNEMT
Ga0115571_143349933300009495Pelagic MarineMILTNKEKLKITWRVVDSLYEKLANELEYELESHNDFI
Ga0115570_1030542933300009496Pelagic MarineMILSNKEKLKITWRVVDSLYEKLANELEYELESHNDFI
Ga0115569_1043219233300009497Pelagic MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELENHNDFIETNDEFM
Ga0115100_1048683613300009608MarineMKLTSEEKLKITWRVVDSLYEKLANELEYELEEHNDFTETNDAYF
Ga0098056_112768443300010150MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIK
Ga0098056_113930113300010150MarineMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVKYM
Ga0098056_129825833300010150MarineMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIK
Ga0098061_106785783300010151MarineMKLTNEEKDEITGRVVDSLYEKLANELEYELQEHENFPETNNAYFDLFNEMTI
Ga0118733_10296231833300010430Marine SedimentMKITNKEKDEITWRVVDSLYEKLASELEYELQEHENFPET
Ga0151661_114901313300011261MarineMKITNKEKDEITWRVVDSLYEKLASELEYELQEHENFPETNDAYFDLFNEMT
Ga0116696_105841643300012284Beach SandMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMDLFNEMTIK
Ga0164315_1126995633300013099Marine SedimentMKLTNEEKDEITWRVVDSLYEKLANELEYELEEHD
Ga0164313_1125909543300013101Marine SedimentMKLTNEEKDEITWRVVDSLYEKLANELEYELEEHDD
Ga0164318_1094615913300013103Marine SedimentMKLTNEEKDEITWRVVDSLYEKLANELEYELEEHDDFTETNDAY
Ga0164321_1073119633300014903Marine SedimentMKLTNEEKDKITWRVVDSLYEKLANELEYELQEHENFPETNDAYMD
Ga0181387_105598333300017709SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLF
Ga0181387_107485533300017709SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTV
Ga0181391_113981413300017713SeawaterMELTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETND
Ga0181412_112620133300017714SeawaterMKLTNEEKLKITWRVVDSLYEKLANELEYELEEHNDFTE
Ga0181419_1008990103300017728SeawaterMKLTNEKKDEITGRVGDSLYEKLANELEYELQEHENFPETNDAYMNLFNE
Ga0181418_102154273300017740SeawaterMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTVK
Ga0181421_107762743300017741SeawaterMKLTNEEKLKITWRVVDSLYEKLANELEYELEEHNDFTETNDAYFDLFDEMTVKIVKYM
Ga0181399_103529653300017742SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAY
Ga0181399_108459833300017742SeawaterMKITNEEKLKITWRVVDSLYEKLANELEYELQEHENFPETN
Ga0181402_105563213300017743SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYQLQEHENFPETNDAYVDLF
Ga0181402_107840753300017743SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMDLFN
Ga0181389_109288743300017746SeawaterMELTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNL
Ga0181405_115110623300017750SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYERQEHENFPETNDAY
Ga0181400_107920813300017752SeawaterMKLTNEEQDEITWREVDSLYEKLANELEYELQEHENFPENNDAYFNLFNEMS
Ga0181400_110977513300017752SeawaterMKLTNKEKLKITWRVVDSLYEKLANELEYELQEHENFPETND
Ga0181411_109230513300017755SeawaterMKITNEEKLKITWRVVDSLYEKLANELEYELEEHNDFTETNDA
Ga0181409_119166523300017758SeawaterMKLSNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTVK
Ga0181410_117126133300017763SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAY
Ga0181406_119663623300017767SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHEHFPET
Ga0187221_110457813300017769SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDA
Ga0181425_104763263300017771SeawaterMKLSNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTVKI
Ga0181395_118032843300017779SeawaterMELTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMN
Ga0181423_121913643300017781SeawaterMKLTNEEKLKITWRVVDSLYKKLASELEYELQEHENFPETTPPRSEE
Ga0181423_135883913300017781SeawaterMKLTNEEKLKITWRVVDSLYEKLANELEYELQEHENFPETN
Ga0213867_106491613300021335SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHNNFTETNDEFLDLFNEMTIKIVK
Ga0213868_1057392913300021389SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLYNEMTIKIVK
Ga0222716_1023121663300021959Estuarine WaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEM
Ga0212030_102672533300022053AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHNNFTETNDEFLDLFNEMTIKIVKYM
Ga0196889_105698733300022072AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLF
Ga0212020_106418833300022167AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHE
Ga0212027_105334233300022168AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFN
Ga0196887_107335513300022178AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHNNFTETNDEFLD
Ga0196901_123533833300022200AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHNDFTETND
Ga0228687_100368643300023696SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVR
Ga0228676_107763443300024248SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFN
(restricted) Ga0233444_1019606413300024264SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYQLQEHENFPET
Ga0228654_101074443300024316SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVKY
Ga0228631_112890033300024329SeawaterMELTNEEKDEITWRVVDSLYEKLANELEYELQEHENF
Ga0228659_102727913300024332SeawaterMKLTNEEKLKITWRVVDSLYEKLANELEYELEEHNDFTET
Ga0228671_102540213300024334SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENF
Ga0244775_1131500333300024346EstuarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMT
Ga0228632_109459213300024420SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPE
Ga0208792_105988633300025085MarineMKLTNEEKLKITWRVVDSLYEKLANELEYELQEHESFPETNDAYM
Ga0208434_103934953300025098MarineMKLTNEEKDEITWKVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVKY
Ga0208669_100615193300025099MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMNLFNEMTIKIVKY
Ga0208666_103088713300025102MarineMKLTNEEKLKITWRVVDSLYEKLANELEYELQEHENFPET
Ga0208666_108085313300025102MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMN
Ga0208013_103647113300025103MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNNAYFDLFN
Ga0208793_105320213300025108MarineMKITNEEKLKITWRVVDSLYEKLANELEYELENHNDFTETNDEFLDLFNEMTI
Ga0209535_110113153300025120MarineMKITNEEKDEITWRVVDSLYEKLANELEYQLQEHENFPETNDAYVD
Ga0208899_102616733300025759AqueousMQINKQDKQDIILKVVDSLYEKLANELEYELQEHENNTETDNAYFDLFNEMTIDIVKEMKKQLFV
Ga0209193_113476013300025816Pelagic MarineMKLTNNEKLKITWRVVDSLYEKLASELEYELQEHENFPETNDAYFDLFNEMTVKIVK
Ga0209603_115394443300025849Pelagic MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFP
Ga0209603_123013513300025849Pelagic MarineMELTNEEKDEITWRVVDSLYEKLANELEYELEDHNNFTETNDEFMDLFNEM
Ga0209632_1055794733300025886Pelagic MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPET
Ga0208797_105373633300027186EstuarineMKITNEEKDEITWRVVDSLYEKLANELEYQLQEHENFPETNDAYVDLFNEMTVKIV
Ga0209271_1007342213300027845Marine SedimentMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTIKIVKY
Ga0209013_1038256413300027858MarineMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNEMTVKIV
(restricted) Ga0233415_10005249123300027861SeawaterMKLTNEEKDEITWEVVDSLYEKLANELEYHLESHEDFKETNNEYLNLF
(restricted) Ga0233413_1024719413300027996SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYNLQENE
Ga0228608_104046243300028136SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVK
Ga0228640_101957713300028273SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLF
Ga0228617_1010843103300028297SeawaterMKITNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVKYM
Ga0228617_106132053300028297SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNLFNE
Ga0183755_100955113300029448MarineMKLTNKEKKEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLF
Ga0315320_1026986213300031851SeawaterMKLTNKEKLKITWRVVDSLYEKLANELEYELEEHNDFTETNDAYFDLFDEM
Ga0315330_1020120873300032047SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMNL
Ga0315315_10041312113300032073SeawaterMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMN
Ga0315321_1082910913300032088SeawaterMKITNEEKLKITWRVVDSLYEKLANELEYELEEHNDFTETNDAYFDLFDEM
Ga0348336_161462_3_1373300034375AqueousMKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYM
Ga0348337_023858_2_1633300034418AqueousMKLTNKEKDEITWRVVDSLYEKLANELEYELEDHNDFTETNDAYMDLFNEMTIK


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