NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068866_10227583

Scaffold Ga0068866_10227583


Overview

Basic Information
Taxon OID3300005718 Open in IMG/M
Scaffold IDGa0068866_10227583 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001496Metagenome / Metatranscriptome683Y
F099660Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0068866_102275831F099660N/AMRLRIKTLLYGTAIFSAVSCFTITFAETNPLSKAQVAD
Ga0068866_102275832F001496N/AVWFVDRKATEISRKGFGLVGTAVGVVDAGVGRADDLIATSRTEVQQAAESISTLGAQAQANSPALNALNERLETNLGPRIAQMQQVLAPVRDAMGSVANAVSMLNALPMLADRAPRLAALDDTFNRLEEMSADATQLRGTLRGLVTAQNSDVNAETVATLNRLTQRIDTRLGEVQAKLQDVRADIDALEARLDTRESRLLFVFNLLALLATLMLAWILYCQIVVIRHYRRRTDDDTAA*
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