| Basic Information | |
|---|---|
| Family ID | F099660 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 103 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MRLRIRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDF |
| Number of Associated Samples | 86 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 68.75 % |
| % of genes near scaffold ends (potentially truncated) | 15.53 % |
| % of genes from short scaffolds (< 2000 bps) | 14.56 % |
| Associated GOLD sequencing projects | 77 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (88.350 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.650 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.184 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.485 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 32.00% β-sheet: 20.00% Coil/Unstructured: 48.00% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF02036 | SCP2 | 4.85 |
| PF08922 | DUF1905 | 2.91 |
| PF00440 | TetR_N | 2.91 |
| PF03466 | LysR_substrate | 1.94 |
| PF00106 | adh_short | 0.97 |
| PF13091 | PLDc_2 | 0.97 |
| PF00270 | DEAD | 0.97 |
| PF13426 | PAS_9 | 0.97 |
| PF03551 | PadR | 0.97 |
| PF13376 | OmdA | 0.97 |
| PF00211 | Guanylate_cyc | 0.97 |
| PF11453 | DUF2950 | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG1695 | DNA-binding transcriptional regulator, PadR family | Transcription [K] | 0.97 |
| COG1733 | DNA-binding transcriptional regulator, HxlR family | Transcription [K] | 0.97 |
| COG1846 | DNA-binding transcriptional regulator, MarR family | Transcription [K] | 0.97 |
| COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 0.97 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 88.35 % |
| All Organisms | root | All Organisms | 11.65 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300001990|JGI24737J22298_10067376 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1071 | Open in IMG/M |
| 3300005343|Ga0070687_100940025 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 623 | Open in IMG/M |
| 3300005354|Ga0070675_102078617 | Not Available | 524 | Open in IMG/M |
| 3300005436|Ga0070713_100589356 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1055 | Open in IMG/M |
| 3300005718|Ga0068866_10227583 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1129 | Open in IMG/M |
| 3300006175|Ga0070712_100762531 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 828 | Open in IMG/M |
| 3300012884|Ga0157300_1086465 | Not Available | 557 | Open in IMG/M |
| 3300013308|Ga0157375_13666282 | Not Available | 511 | Open in IMG/M |
| 3300015373|Ga0132257_100509690 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1477 | Open in IMG/M |
| 3300021168|Ga0210406_10011244 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus | 8749 | Open in IMG/M |
| 3300021475|Ga0210392_11401432 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 523 | Open in IMG/M |
| 3300025928|Ga0207700_10897992 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 793 | Open in IMG/M |
| 3300025960|Ga0207651_10874567 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 799 | Open in IMG/M |
| 3300027437|Ga0207476_100961 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1162 | Open in IMG/M |
| 3300030848|Ga0075388_11551634 | Not Available | 530 | Open in IMG/M |
| 3300032013|Ga0310906_10306024 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1017 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 11.65% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 10.68% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 8.74% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 6.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.83% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 5.83% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 4.85% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 4.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 3.88% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 3.88% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.91% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 2.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.91% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 1.94% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.94% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.94% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.94% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 0.97% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.97% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.97% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459002 | Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm | Environmental | Open in IMG/M |
| 2170459005 | Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm | Environmental | Open in IMG/M |
| 2189573004 | Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen) | Environmental | Open in IMG/M |
| 3300000953 | Soil microbial communities from Great Prairies - Kansas Corn soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Host-Associated | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
| 3300005166 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 | Environmental | Open in IMG/M |
| 3300005179 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 | Environmental | Open in IMG/M |
| 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 | Host-Associated | Open in IMG/M |
| 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 | Host-Associated | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Environmental | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012884 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 | Environmental | Open in IMG/M |
| 3300012907 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1 | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300024279 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33 | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026523 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes) | Environmental | Open in IMG/M |
| 3300026803 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300027437 | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300028072 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16 | Environmental | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300030847 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030848 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030916 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300031944 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 | Environmental | Open in IMG/M |
| 3300032013 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| E1_09078520 | 2170459002 | Grass Soil | MRLRIRTVLFCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVE |
| E41_02385340 | 2170459005 | Grass Soil | MRLRIRTVLFCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLT |
| E41_08272150 | 2170459005 | Grass Soil | MHLRIRTLVCGTAILSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYL |
| FG2_08293980 | 2189573004 | Grass Soil | MRTLLCCTPIFSAVSFFTITFAETTPLNKAQVGDRIRKVENGVDDFEKYLTS |
| JGI11615J12901_127600302 | 3300000953 | Soil | MRLRMPTVVCCTAILSAVGFFTIAFAETTHFNKAQVGDRIRKVGKRRG* |
| JGI10216J12902_1022905031 | 3300000956 | Soil | MRLRIRTILCGTAIFSAVSFFTITFAETTPFNKAQVADRIRKVENG |
| JGI24737J22298_100673761 | 3300001990 | Corn Rhizosphere | MRLRIRTLLCGTAIFSAVSFFTIAFAETTPFNKAQVGDRIRKVE |
| Ga0062593_1017084651 | 3300004114 | Soil | MRLRIRTLVCGTAILSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTS |
| Ga0062590_1020282392 | 3300004157 | Soil | MRSRMRNVVCFTAIFLGVGFFTITFAETTHFNKAQVGDRIRKVEQGVDDFEKYL |
| Ga0066674_105160271 | 3300005166 | Soil | MRLRIRTVLCCTAIFSAVNFFTITFAETNPFSKAQVADRIRKVENGVDDFEKY |
| Ga0066684_101152175 | 3300005179 | Soil | MRLRIRTVVCCTAIFSAVSFFTITFAETNPFSKAQVADRIRKVE |
| Ga0066684_109008872 | 3300005179 | Soil | MRLRTRTVVCCTAIFSAVSFFTITFAETNPFSKAQVADRIRKVE |
| Ga0065704_108214631 | 3300005289 | Switchgrass Rhizosphere | MRLRIRTLLCCTAIFSAVSLFTITFAETTPLNKAQVGDRIRKVENGVDDF |
| Ga0065715_106137162 | 3300005293 | Miscanthus Rhizosphere | MRSKIRTLVCGTAILSAVSFFTITFAETNPLSKAQVADQIRKVENGV |
| Ga0065707_109332471 | 3300005295 | Switchgrass Rhizosphere | MRLRIRTAVCCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTS |
| Ga0068868_1003279493 | 3300005338 | Miscanthus Rhizosphere | MRSRMRNVVCFTAIFLGVGFFTITFAETTHFNKAQVGDRIRKVEQ |
| Ga0070687_1009400251 | 3300005343 | Switchgrass Rhizosphere | MRLRIRTVLFCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSR |
| Ga0070675_1020786171 | 3300005354 | Miscanthus Rhizosphere | MRLRIRTILCCTVIFSAVSFFTITFAETNPFSKAQVADRIRKVENGVDDFEKYLTTR |
| Ga0070673_1013404202 | 3300005364 | Switchgrass Rhizosphere | MRLRIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADSIRKVENGVDDFEKYLTS |
| Ga0070667_1002896394 | 3300005367 | Switchgrass Rhizosphere | MRSRIQTVACCTAIFSAVCFFTIASAETTHFNKAQVGDRIRKVENGVDDFEKYLT |
| Ga0070713_1005893561 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDF |
| Ga0070713_1010452411 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDF |
| Ga0070701_109023781 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLKTRTILCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFE |
| Ga0068866_102275831 | 3300005718 | Miscanthus Rhizosphere | MRLRIKTLLYGTAIFSAVSCFTITFAETNPLSKAQVAD |
| Ga0070712_1002588482 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIQTAVCCTAILFAVSFFTITFAETNPLSKAQVADQIRKVE |
| Ga0070712_1007625311 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSR |
| Ga0070712_1011846031 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRI |
| Ga0097621_1021791732 | 3300006237 | Miscanthus Rhizosphere | MRSRMRNVVCFTAIFLGVGFFTITFAETTHFNKAQVGDRI |
| Ga0079221_100342061 | 3300006804 | Agricultural Soil | MHCRMPTVVCCTAILSAVGLFTITFAETTPFNKAQVADRIRKVENGVD |
| Ga0075433_109969971 | 3300006852 | Populus Rhizosphere | MRLKIRTVLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYL |
| Ga0105245_102924042 | 3300009098 | Miscanthus Rhizosphere | MRTRTAVCCTAILSAVSLSAIAFAETTHFNKAQVGDLIRKVETGV |
| Ga0075423_119108112 | 3300009162 | Populus Rhizosphere | MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQVGD |
| Ga0105242_120999672 | 3300009176 | Miscanthus Rhizosphere | MRIKTLVCGAAIFSAVSFFTITFAETNPLSKAQVADQIRKV |
| Ga0134125_120243601 | 3300010371 | Terrestrial Soil | MRSRIRTLVCCTAIFSAVSFFTITFAETNPLSKAQVAEQIRKVENGVDDFEKYLA |
| Ga0134128_110676761 | 3300010373 | Terrestrial Soil | MRLRIRTLLCGTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYL |
| Ga0134123_111070581 | 3300010403 | Terrestrial Soil | MRLRIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADS |
| Ga0105246_112962822 | 3300011119 | Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVGFFTITFAETTPFNKAQVGDR |
| Ga0157300_10864651 | 3300012884 | Soil | MRLRIRTVLFCTAIFSAVSFFTITFAETTPFNKAQVADRIRKVENGVDDFEKYLTSR |
| Ga0157283_103838901 | 3300012907 | Soil | MRLRIRTLLCCTAIFSAVSFFTITFAETTPLNKAQVGDRIRKVE |
| Ga0164300_103109751 | 3300012951 | Soil | MRLRIRTVLCCTAIFSAVSFFTITFAETNPFSKAQVADSIRKVENGVDD |
| Ga0164303_100204571 | 3300012957 | Soil | MRLRIKTLVCGTAIFSAVSFFTITFAETTPFNKAQV |
| Ga0164302_101130153 | 3300012961 | Soil | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYL |
| Ga0164309_113078491 | 3300012984 | Soil | MRLKIRTAVCCTAIFAAVSFFTITFAETNPLSKAQVA |
| Ga0164308_114275351 | 3300012985 | Soil | MRLRIRTVLCCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDF |
| Ga0164304_103867432 | 3300012986 | Soil | MRLRIRTLLCGTAIFSAVSFFTITFAETTPFNKAQVG |
| Ga0164304_118665191 | 3300012986 | Soil | MRLRIRTLLCGTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFE |
| Ga0164305_118686101 | 3300012989 | Soil | MRLRIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADRIRKVENG |
| Ga0157374_115313802 | 3300013296 | Miscanthus Rhizosphere | MRLKTRTILCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYL |
| Ga0157378_117961061 | 3300013297 | Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETAPFNKAQVGDRIRKVENGVDDFEKYLT |
| Ga0157378_123498321 | 3300013297 | Miscanthus Rhizosphere | MRLRIRPLLCGTAIFSAVCLFNIAFAETSPFSKAQVGDRIRKVEN |
| Ga0157378_123747232 | 3300013297 | Miscanthus Rhizosphere | MRLRIKTLLYGTAIFSAVSCFTITFAETNPFNKAQVGDRIRKVENGVDDF |
| Ga0157375_136662821 | 3300013308 | Miscanthus Rhizosphere | MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYLTS |
| Ga0173478_103022351 | 3300015201 | Soil | MRLRIRTVLFCTAIFSAVSFFTITFAETNPLSKPQVADQIRKVENGVDDFEK |
| Ga0132258_105224385 | 3300015371 | Arabidopsis Rhizosphere | MRLRIRTVVCCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLT |
| Ga0132258_106417485 | 3300015371 | Arabidopsis Rhizosphere | MRLRIRTILCCTAIFSAVSFFTITFAETNPLSKAQVADRIR |
| Ga0132257_1005096903 | 3300015373 | Arabidopsis Rhizosphere | MRLRIRTVVCCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSR |
| Ga0132257_1027721111 | 3300015373 | Arabidopsis Rhizosphere | MRLRIRTAVCCTAILSAVSFFTITFAETNPLSKAQVADQIRKVENGV |
| Ga0132255_1005044252 | 3300015374 | Arabidopsis Rhizosphere | MRSRIQTVACCTAIFSAVCFFTIASAETTHFNKAQV |
| Ga0132255_1050359841 | 3300015374 | Arabidopsis Rhizosphere | MKTVVGCTAILSAVGLFSVTFAETTHFNKAQVGDRIRKVE |
| Ga0173482_106192201 | 3300019361 | Soil | MNLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQ |
| Ga0210406_100112449 | 3300021168 | Soil | MRLRIRTVLCGTAIFSAVSFFAITFAETTPFNKAQVSDRIRKVENGVDDFE |
| Ga0210384_106496511 | 3300021432 | Soil | MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKAQV |
| Ga0210392_114014321 | 3300021475 | Soil | MRLRIRTVLCGTAIFSAVSFFTITFAETTPFNKSQVGDRIRKVENGVDDFEKYLTS |
| Ga0210402_106351111 | 3300021478 | Soil | MRLKIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADRIRKVENGVDDFE |
| Ga0247692_10298191 | 3300024279 | Soil | MRLRIRTLLCCTAIFSAVSFFTITFAETTPLNKAQV |
| Ga0207692_108157702 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETTPLNKAQVGDRIRKVENGVDDFEKY |
| Ga0207642_110239491 | 3300025899 | Miscanthus Rhizosphere | MRLRIRTVLFCTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFE |
| Ga0207680_109869331 | 3300025903 | Switchgrass Rhizosphere | MRLKTRTILCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDD |
| Ga0207693_105169452 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIQTAVCCTAILFAVSFFTITFAETNPLSKAQVADQIRKVENGV |
| Ga0207693_107585611 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVADQIRKVENGV |
| Ga0207693_110947262 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKY |
| Ga0207700_108979922 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTVLCGTAIFSALSFFTITFAETTPFNKAQVGDRIRK |
| Ga0207701_102248401 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLRIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADSIRKV |
| Ga0207701_109513541 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MRLKIRTVLCYTAIFSAVSFFTITFAETNPFSKAQVADSIRKV |
| Ga0207644_107094761 | 3300025931 | Switchgrass Rhizosphere | MRLKTRTILCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENG |
| Ga0207686_107036052 | 3300025934 | Miscanthus Rhizosphere | MRSRMRNVVCFTAIFLGVGFFTITFAETTHFNKAQVGDRIR |
| Ga0207670_101786411 | 3300025936 | Switchgrass Rhizosphere | MRLKTRTILCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGV |
| Ga0207679_107378841 | 3300025945 | Corn Rhizosphere | MRLRIRTILCCTAIFSAVSFFTITFAETNPFSKAQVADSIRKVENGVDDFEKYL |
| Ga0207651_108745671 | 3300025960 | Switchgrass Rhizosphere | MRLRIRTVLFCTAIFSAVSFFTMTFAETTPFNKAQVGDRIRK |
| Ga0207658_114395172 | 3300025986 | Switchgrass Rhizosphere | MRLRMRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYLT |
| Ga0207703_110538252 | 3300026035 | Switchgrass Rhizosphere | MRLRIRTILCCTAIFSAVSFFTITFAETNPFNKAQVGDRIRKVENGVDDFEKY |
| Ga0207641_109365572 | 3300026088 | Switchgrass Rhizosphere | MRLRIRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENG |
| Ga0207683_121330011 | 3300026121 | Miscanthus Rhizosphere | MRLRIRTVLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKYLT |
| Ga0209808_12588822 | 3300026523 | Soil | MRLRTRTVVCCTAIFSAVSFFTITFAETNPFSKAQVADRIRKVENG |
| Ga0207549_1043151 | 3300026803 | Soil | MRLRIRTVVCGTAIFSAVSFFTITFAETTPLNKAQVGDRIRKVE |
| Ga0207476_1009611 | 3300027437 | Soil | MRLRIRTLLCGTAIFSAVSFFTITFAETNPFSKAQVADSIRKVE |
| Ga0247675_10554171 | 3300028072 | Soil | MRLRIRTLLCCTAIFSSVGFFTITFAETTPFNKAQVGD |
| Ga0268266_109827092 | 3300028379 | Switchgrass Rhizosphere | MRLRIRTLLCCSAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKY |
| Ga0075405_122028941 | 3300030847 | Soil | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLT |
| Ga0075388_115516341 | 3300030848 | Soil | MRLRIRTLVCGTAILSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSR |
| Ga0075386_121802102 | 3300030916 | Soil | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVADQIRK |
| Ga0170824_1005921011 | 3300031231 | Forest Soil | MRLRIRTVLCGTAIFSAVSFFTVTFAETNPLSKTQVA |
| Ga0170824_1072586003 | 3300031231 | Forest Soil | MRLRIRTAVCCTAIFFAVSFFTITFAETNPLSKAQVA |
| Ga0170824_1143250502 | 3300031231 | Forest Soil | MRLRIRTAVCCTAIFSAVSFCTITFAETNPLSKAQVADQIRKVENGVDDFE |
| Ga0170820_152295701 | 3300031446 | Forest Soil | MRLRIRTVVLCTAIFSAVSFFTITFAETNPLSKAQVADRIRKVENGVD |
| Ga0170818_1132332772 | 3300031474 | Forest Soil | MRLRIRTVLCCTAIFSAVSFFTITFAETAPFNKAQVADRIRKVENGV |
| Ga0307475_115462981 | 3300031754 | Hardwood Forest Soil | MRLRIRTILCCTAIFSAVSFFTITFAETPAFNKAQVGDRIRKVENG |
| Ga0310884_109523721 | 3300031944 | Soil | MRLRLRTLLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEKY |
| Ga0310906_103060241 | 3300032013 | Soil | MRLRIRTLLCCTAIFSAVSFFTITFAETTPLNKAQVGDR |
| Ga0310890_105652801 | 3300032075 | Soil | MRLRIRTLLCCTAIFSAVSFFTITFAETAPFNKAQVGDRIRKVENGVDD |
| Ga0307470_107271581 | 3300032174 | Hardwood Forest Soil | MRLRIRTVLCCTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEK |
| Ga0307472_1014933391 | 3300032205 | Hardwood Forest Soil | MRLRIKTLVCGTAIFSAVSFFTITFAETTPFNKAQVGDRIRKVENGVDDFEK |
| Ga0307472_1016689392 | 3300032205 | Hardwood Forest Soil | MRLRIRTVLCCTAILSAVSFFTIAFAETTPLNKAQVGDRIRKV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |