NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0077107_104844

Scaffold Ga0077107_104844


Overview

Basic Information
Taxon OID3300005627 Open in IMG/M
Scaffold IDGa0077107_104844 Open in IMG/M
Source Dataset NameCrenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Crenothrix Polyspora → Crenothrix Polyspora Biofilm Communities From Wolfenbuettel Waterworks, Germany

Source Dataset Sampling Location
Location NameGermany: Wolfenb?ttel, Lower Saxony
CoordinatesLat. (o)52.149Long. (o)10.542Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007831Metagenome / Metatranscriptome344Y

Sequences

Protein IDFamilyRBSSequence
Ga0077107_1048441F007831GAGGMMILVAVMFLLPPVLGTLYLYVSGVFINRRTFQFVFYTLLAFFALTIGISTQFSYQGYDRLATTPVSLLPVLPEP*
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