Scaffold Ga0049081

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10000069 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005581 Open in IMG/M

Scaffold ID

Ga0049081_10000069 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36163
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (83.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36163

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (83.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F014968	Metagenome	258	Y
F016389	Metagenome / Metatranscriptome	247	Y
F030064	Metagenome	186	Y
F084140	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000006915	F014968	GAG	MSHIVNLSKEEVRACADIALNRWMIKFGSVDRPNYTNKAILEPEIAANVRTIVAEYAVAKLYKKSFTFPFYTNEEHYYRKDIAEVSTNIEVKSIRTKDEIPVFPKDIRDGWLLVGARVLDRDYYSEVEVFGWMRMEDCQREEWKYAPEGSWRIPLDQFNQSMLD*
Ga0049081_1000006929	F030064	AGGAG	VTTTFATIGIIAGALISIGILLSPFYKKLKRWSAWFERFMRDWEGEEEEPGRARVPGVMERLNKLDGELSNNGGSTTKDKVDQLHDNQAIFMKSVSERLSAIENCLTVTPTDGPKQEKI*
Ga0049081_1000006932	F016389	N/A	MKLIRKFAMQGHAVPSGVHSPRGPFPPEVLAQPRMDYGDQHSDSLHVGLDDVRFFKCRACEEVLLETELTNHDCEEINGY*
Ga0049081_1000006935	F012098	N/A	MPKVHNIGSNHFVQFTKFPYTWGSKLLVRGWTQEIEEPYRTSQPFIVRLPGYKALVLGRWSGMRNEEEALNGALERRDVTYDDFTEKAGWTAPEQSREAGRQDIYSRFDLMDGAIDVHIGQELDRLAKTSE*
Ga0049081_1000006936	F084140	GGAG	MYILGKNLTGWQKHQSDADLDELLMGAEAFYAIAKELKKRS*
Ga0049081_1000006943	F008023	AGGAG	VANTPTSPLDATGKAAETAAKKNAEQLRKRKDEISIAAQVEAESLEKDIFDPKHPDAPLVLDEIENVGVSTAGDMVVIRTITDIDDMTYGVGNSYSFKAGVKYRVPAALASYLEQLGYIWRPN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049081_10000069

Overview

Ecosystem & Geography

Associated Families

Sequences