Scaffold Ga0070741

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10000639 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	120657
Total Scaffold Genes	150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	98 (65.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

120657

Total Scaffold Genes

150 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

98 (65.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002992	Metagenome / Metatranscriptome	515	Y
F003246	Metagenome / Metatranscriptome	498	Y
F004652	Metagenome / Metatranscriptome	429	Y
F004844	Metagenome / Metatranscriptome	421	Y
F018484	Metagenome / Metatranscriptome	235	Y
F026338	Metagenome / Metatranscriptome	198	Y
F048609	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000639124	F048609	GGAG	MADAPTPEDLAALQEELASFSVGQFLVSTASTIASLAYAKLERGDLPEAKKAIDALQSLVPLVEGPLNPQFQLALSKLQVDYAAAVSG*
Ga0070741_1000063917	F018484	N/A	VRLLGFAILAAALAAPAAQAKGNITVRLGDSTPAAGESFTVYVHTGYAVPANDWLRLVAVAPGKGWQSVVSAVEGYPTRPAANLPRDGFAAKLVRTGTYTWRAVVTLPRPGRWRLVVPNGTHAGYMLPPPAAWMPWVHVHG*
Ga0070741_1000063936	F004844	GAG	MSRARERITVFLFALFLLALFVALAFAAGYGIGRMLV*
Ga0070741_1000063961	F004652	GAG	MAETIEIDVPREGIGEALTEALAAHGLHAEVIDEDDRCALRVRFADEHGRLVDDAVHAIESYLAEQGSPLVVQRANGGAVVRPPGD*
Ga0070741_1000063969	F003246	N/A	VTSSAREPIKPSEAVAGIMAAGACFLGAMELFYRPFRMAPAALILLLAATVMSGPQQRLVRVGFAIVGVCFVVGAAIQVLTHHPLY*
Ga0070741_100006398	F002992	GGA	MVSLRNTPAVEHASLPNGGTVTVWVGVPEDSYIDHSQVTNVDLQLHEGNGVVASITTSLSPDEEDEAHELARRVKAAIEAGDVGLHAGDLERFA*
Ga0070741_1000063989	F026338	N/A	VNLNWRSKRVVLLALAAVGVVLFAGGMAAAWHNRHHEVCPDGKPPVAQRADMLGLVDYKCHDGKIITVSD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070741_10000639

Overview

Ecosystem & Geography

Associated Families

Sequences