| Basic Information | |
|---|---|
| Taxon OID | 3300003512 Open in IMG/M |
| Scaffold ID | SACTD2sed_1021312 Open in IMG/M |
| Source Dataset Name | Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1765 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Macrotidal River → Macrotidal River Microbial Communities From The South Alligator River System, Northern Australia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | River | |||||||
| Coordinates | Lat. (o) | -12.2376 | Long. (o) | 132.4096 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003661 | Metagenome / Metatranscriptome | 474 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SACTD2sed_10213122 | F003661 | N/A | MDPATATIIAIIVAAGSEVIAMSPLKENSWAQLIVKALKVVFPKKP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |