Sample 3300003512

3300003512: Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1

Overview

Basic Information
IMG/M Taxon OID	3300003512 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111536 \| Gp0106802 \| Ga0060302
Sample Name	Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26357982
Sequencing Scaffolds	35
Novel Protein Genes	47
Associated Families	45

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → Predicted Viral	9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Macrotidal River Microbial Communities From The South Alligator River System, Northern Australia
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Macrotidal River → Macrotidal River Microbial Communities From The South Alligator River System, Northern Australia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	River
Coordinates	Lat. (^o)	-12.2376	Long. (^o)	132.4096	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000684	Metagenome / Metatranscriptome	938	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002197	Metagenome / Metatranscriptome	584	Y
F002391	Metagenome / Metatranscriptome	564	Y
F002564	Metagenome / Metatranscriptome	547	Y
F002907	Metagenome / Metatranscriptome	521	Y
F003661	Metagenome / Metatranscriptome	474	Y
F004169	Metagenome / Metatranscriptome	450	Y
F005478	Metagenome / Metatranscriptome	399	Y
F008210	Metagenome / Metatranscriptome	337	Y
F008619	Metagenome	330	Y
F008686	Metagenome / Metatranscriptome	329	Y
F009260	Metagenome / Metatranscriptome	320	Y
F011586	Metagenome / Metatranscriptome	289	Y
F014494	Metagenome / Metatranscriptome	262	Y
F015864	Metagenome / Metatranscriptome	251	Y
F019471	Metagenome / Metatranscriptome	229	Y
F023884	Metagenome / Metatranscriptome	208	Y
F030378	Metagenome / Metatranscriptome	185	Y
F034111	Metagenome / Metatranscriptome	175	N
F036961	Metagenome / Metatranscriptome	169	Y
F037616	Metagenome / Metatranscriptome	167	N
F042899	Metagenome	157	Y
F043368	Metagenome / Metatranscriptome	156	N
F044297	Metagenome / Metatranscriptome	154	Y
F046343	Metagenome / Metatranscriptome	151	Y
F048931	Metagenome / Metatranscriptome	147	Y
F051917	Metagenome	143	Y
F052459	Metagenome	142	Y
F053243	Metagenome / Metatranscriptome	141	Y
F053258	Metagenome / Metatranscriptome	141	N
F053761	Metagenome / Metatranscriptome	140	Y
F058091	Metagenome / Metatranscriptome	135	N
F058924	Metagenome / Metatranscriptome	134	Y
F064339	Metagenome	128	N
F066589	Metagenome / Metatranscriptome	126	Y
F067746	Metagenome / Metatranscriptome	125	Y
F077052	Metagenome / Metatranscriptome	117	Y
F078200	Metagenome / Metatranscriptome	116	Y
F084832	Metagenome / Metatranscriptome	112	Y
F087062	Metagenome	110	Y
F089841	Metagenome / Metatranscriptome	108	Y
F095700	Metagenome	105	Y
F104970	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
SACTD2sed_1000380	Not Available	5939	Open in IMG/M
SACTD2sed_1000420	All Organisms → Viruses → Predicted Viral	2844	Open in IMG/M
SACTD2sed_1000421	All Organisms → Viruses → Predicted Viral	4775	Open in IMG/M
SACTD2sed_1000472	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3223	Open in IMG/M
SACTD2sed_1000656	Not Available	49238	Open in IMG/M
SACTD2sed_1000895	All Organisms → cellular organisms → Bacteria	6159	Open in IMG/M
SACTD2sed_1001218	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
SACTD2sed_1001295	All Organisms → Viruses → Predicted Viral	2406	Open in IMG/M
SACTD2sed_1001578	All Organisms → Viruses → Predicted Viral	1999	Open in IMG/M
SACTD2sed_1002212	All Organisms → Viruses → Predicted Viral	3646	Open in IMG/M
SACTD2sed_1002811	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1863	Open in IMG/M
SACTD2sed_1003683	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
SACTD2sed_1004679	Not Available	808	Open in IMG/M
SACTD2sed_1004791	Not Available	2403	Open in IMG/M
SACTD2sed_1005798	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	795	Open in IMG/M
SACTD2sed_1006153	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	928	Open in IMG/M
SACTD2sed_1006550	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1967	Open in IMG/M
SACTD2sed_1007995	All Organisms → Viruses → Predicted Viral	2418	Open in IMG/M
SACTD2sed_1008824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	698	Open in IMG/M
SACTD2sed_1010205	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2	1059	Open in IMG/M
SACTD2sed_1010886	All Organisms → Viruses → Predicted Viral	2260	Open in IMG/M
SACTD2sed_1011377	Not Available	512	Open in IMG/M
SACTD2sed_1012100	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
SACTD2sed_1013873	Not Available	628	Open in IMG/M
SACTD2sed_1017973	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	510	Open in IMG/M
SACTD2sed_1018091	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	875	Open in IMG/M
SACTD2sed_1019785	All Organisms → Viruses → Predicted Viral	1090	Open in IMG/M
SACTD2sed_1021312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1765	Open in IMG/M
SACTD2sed_1023821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	789	Open in IMG/M
SACTD2sed_1024582	All Organisms → Viruses → Predicted Viral	1126	Open in IMG/M
SACTD2sed_1025009	Not Available	1113	Open in IMG/M
SACTD2sed_1028836	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	869	Open in IMG/M
SACTD2sed_1029265	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
SACTD2sed_1032408	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	516	Open in IMG/M
SACTD2sed_1037084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	606	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
SACTD2sed_1000380	SACTD2sed_10003804	F043368	MTNGASDSFKKRILKECEKLAEDGQHIEASQLFRTYFPEFGSALPDRFDTVHV*
SACTD2sed_1000420	SACTD2sed_10004205	F037616	MKKTPDLSAIMADYTAQVRAEEKRRQAIRNAAAAGTQEWFAKWGRSSSWNISDRD*
SACTD2sed_1000420	SACTD2sed_10004206	F005478	YDDYDLDYTFSNDYNLDEDTYYEYYTCLDAHELDEDYAHNTQDLDALAYRHYA*
SACTD2sed_1000421	SACTD2sed_10004216	F005478	MYDDYDLDYTFYNDYNLDEDTYYEYHAQSDVDLDEDYARGELDYSNLAYRHYA*
SACTD2sed_1000472	SACTD2sed_100047213	F053258	MNLTNEQTELLIDAIWKRQHHFIAGDRRYREYGXEASLPYKYTRDEFK*
SACTD2sed_1000656	SACTD2sed_100065615	F077052	MPSIVFNYGSWWNWEDYPGQKVAFDSFTKIIYVAEGVTELDVKIDVYSAWKEWVINSPQYPLPAAWDKAITAIGGEPLTDILNVGTTFFLENGWRIQPFASKTPYVLTVNGNLYTREAGENPFLFAEGVSVNLSRSNLVDQVVATASLTTEDLLSIASYVWSQSSFGSPNGSYGALVNRIDSDVSSLDINRLNKALTKGEFLALK*
SACTD2sed_1000895	SACTD2sed_100089511	F087062	MTDAAFNLLQLEQRPNWYSHLGAVEAAIAEERRIWNIRTAAGWSCDEGGWYSPNEIHESDWEHEWGYPLPEDEGYAACVAALDPYWLTASPAHV*
SACTD2sed_1001218	SACTD2sed_10012181	F095700	MAQTEIGRPVSLSLSAKNWAETKEQSAARSAQSSASCWRSGRSPALPYPPHECQESTMPAYLPFSKGTSLLCTIGDISTLH*
SACTD2sed_1001286	SACTD2sed_10012863	F034111	MLELTLASLLNTMSADFCALMEKDGDVVKSTFLAYSMANKQYGPDNVIKIINEASPLEIKTLAVSSVITKCPNKL*
SACTD2sed_1001295	SACTD2sed_10012952	F046343	MTLKKTGTEVLTKDEMKELIALKEAITYDPHTVSAQKMEKFAELMVRSLEGKESNAPQ*
SACTD2sed_1001295	SACTD2sed_10012954	F002197	MYSLKILAPFLAAMCLEGATTGQGDYCVVDNNPPSVVKYYETGKSCYVNGTFYSKCEDRLNGSI*
SACTD2sed_1001295	SACTD2sed_10012955	F030378	MTNEYLSSDFSYKKYSLEQLDNWVNDALNCEDLTPQDIYDTVIKCVDESVEYHKKYLTKSIELLSLLKGHRPNVFDASAHEFNDFWYEQDKISQHYSEEDLNAMCDAAADKEKCREYNLXRKQVVMSGRLECNV*
SACTD2sed_1001295	SACTD2sed_10012958	F002907	VKINPYSIFMKWRIDEPTPLEILAEKVQQLEDKVRVLEECNVEQTNALYECWNSLDARIDILAEYKTDV*
SACTD2sed_1001578	SACTD2sed_10015783	F008210	MAVTVDVLKLTQVQGVVAVRGTDATGVIALATTLKKSTETVSSPNVNIKGLQWALSASCRAYLQRNTKILYEMVGAGNIDFYSWSDVDENDQDISIVIAGGNGGTVIVECAKVLGYGPQQHQNQGDLG*
SACTD2sed_1002212	SACTD2sed_100221210	F000744	MTETNVNLNVHEIGVILSALQLLTHRDENQIAKEYGSTEALYSKLYSIWETLDRSETGIRNDVVPSY*
SACTD2sed_1002212	SACTD2sed_10022126	F015864	MTDLRYSTGCELEEFLYEKCRQDPDLLATIVNEYVTSLSDNKLIELEDFLTNNFGDN*
SACTD2sed_1002811	SACTD2sed_10028111	F008619	QYLTAVPWVFTVIPHNYLYYPQVRDVIQAIDNLDRQLPDTIQFNSTNLNWFTKNQGTATTASLNGTPTPNSQTINLVSNGTYKAGDFISINGYVYKITADSTGSXSSAPVLLGNNCVFTVVAEQCPTYSLNPMTNGAFVEWSGPFVFREYIIQ*
SACTD2sed_1003683	SACTD2sed_10036831	F023884	YCESRPHRLWVTISRARNTPGGWELWYLIANCARRARATAAAYARRFGCEQGVRDAKRVLGFAQARIAQITAWSRLFALFALALLVVVSLGITLLGRGGPGALALLRRVASRRRGRWDLSVVSAMVRLLQIDKSLFAHLSPHIRLDLELSLANVS*
SACTD2sed_1004679	SACTD2sed_10046792	F089841	MNTIFFSRKHELKPGYYVIPFSCSDLMNVNTEVSARDRTETEQKVIDTIVDRITLALYNNGFILQNVNFRNMAISAIIDTKASLR*
SACTD2sed_1004679	SACTD2sed_10046793	F044297	SDISIRLGELDHNLYNFGIHSEVVIQECKLLCELGFVDEVNCIIHDFENFIFNNS*
SACTD2sed_1004791	SACTD2sed_10047912	F002564	MALTIDRGTNLVEYHESTPLTALNDSLEIHADSSEFTFAAVVTGGANFTLALETNFNGGAEWFTIDTSKTINADGQYVYFYTGKPCNRIRMRIESISSGTPNVVPHIGVAYHG*
SACTD2sed_1005798	SACTD2sed_10057981	F058091	VEFWEREAYDIAYKITGGNPLYLDLVPHIYLLLSKLDIRESDLPRVFARWGWNQYTWKESKFNQLFRGSISVPSGFDKIDDGMMYQESKYQKILDQFMDDNPENDQILFCKEITKMHLCGMTYREIRSLTGISLDTIHKAIKKFKNDLNNYACLNWDGKSSPEFSTP*
SACTD2sed_1006153	SACTD2sed_10061532	F053761	MGDRTNYTIVTTDNPLQNINVYAHWDGSESVRILQNALTKALPRIKMGDTSYAARIVLDQLTIGGRDEETGYGVYIGDFVDHEEEHEYKEVNFTNNTVTIGQMTFKIEEFCQVLTXXXANRTNWTFTTYDKNHITNMSIF*
SACTD2sed_1006550	SACTD2sed_10065502	F064339	MNLAQAFGQKFAEDKDALRIRSFELNGHTFKVKVPLTAENEAMYERTKTIDENLAQKFYNDLSQEILDNIEKYKNDSDIDIQENDIVVKGISLKETARNKVLTQNRITELVRLLVPENKDFDMSTVTYDQIDELFPFSVQMELIEEINNVISPSYAQNRKK*
SACTD2sed_1007995	SACTD2sed_10079953	F058924	MKALRVTVKTRVNILVHDDEDEWEIKHAALQHVHDDIHFHLKDKFIIDYDEH*
SACTD2sed_1008623	SACTD2sed_10086231	F104970	MAQDELLSLFPTPVLIAQYPMPYEKELEFIRDLPCRRENKGGDAGNVIHYNRQSEDTFVLDKPELSNIKAFIQSKIYKFVTEIMNSDNE
SACTD2sed_1008824	SACTD2sed_10088242	F048931	MVRQIVDRDTWFIAHNEDLSVIHYGFCAAGTALDSGQPIIEEFDNEADWLIRLAELGIIPEEE*
SACTD2sed_1010205	SACTD2sed_10102051	F084832	MRPDYATPEDFARWRSYAETLSNSALRYVIADARQAARNMRGFNETREGYYEDQAFTYADELARRRRHD*
SACTD2sed_1010886	SACTD2sed_10108864	F019471	MFTSITNRKAFGATYQWAVLSTLPMDSDKSRHGLRVCEINRALGMPKEARTTVTLLLKSMAADGMVERYEYKVGRRQFITYKRLLPLRKRERIARFLGV*
SACTD2sed_1011377	SACTD2sed_10113771	F046343	MTLAKTGSGILSEEEMTELVALKEAITYAPQTVSTQKMEKFVELMVRSLE
SACTD2sed_1012100	SACTD2sed_10121003	F066589	LPFLSMDMGFEDVRQIHESITLHLQNWVSCPDKKERLEGLKDFLERLMLEYTFKVEE*
SACTD2sed_1013873	SACTD2sed_10138731	F053243	MDKKEVKAIADKEVKAHEKRMHPGAKKMAAGGKTNAQMLKYGRNMAKVMNQRSVGRGG*
SACTD2sed_1013873	SACTD2sed_10138732	F009260	MATYKQPKKVPTVVVGEESAKKYMKEANVSVANTNSNEYKPTKTSGIKIRGTGAATKGVMARGPMA*
SACTD2sed_1013873	SACTD2sed_10138733	F008686	MTYNELVAAIQSYTENQFPDTYLADGSAVSSATQINTFIQQAEQRIYNS
SACTD2sed_1017973	SACTD2sed_10179731	F000324	LNPAHLVHHLTYDGATLNVYHANKGEGLPRHEHVYSHLTMCHAGSCVVRKEGRELVMTKDTQPVNLTAAEWHEIEALENGTVFVNVFAEGKY*
SACTD2sed_1018091	SACTD2sed_10180911	F051917	MYIRINMLYLQKNQINTLYLNINNNSRNTFNSYELVFTHVMSKEVKTYTVNTNDEAVFFENIRYCTITLDFITEDLNYEGQYTLVIYGNPDNIKVYNGMVVLEGLAESQPFTQYISPNETNENYIYIQE*
SACTD2sed_1019785	SACTD2sed_10197852	F004169	MSDIDLKQVISRYQQKSFELFNQNIVLETQVEKLKETINSLNDELEKLSKPKRGSKPTGDFE*
SACTD2sed_1020931	SACTD2sed_10209311	F052459	LKTSQNLINEMYAYQYATDKNGYTTDTPEGGLDHLIDAARYGCMMRLSQKAQNKGTYAITIGKYKY*
SACTD2sed_1021312	SACTD2sed_10213122	F003661	MDPATATIIAIIVAAGSEVIAMSPLKENSWAQLIVKALKVVFPKKP*
SACTD2sed_1023821	SACTD2sed_10238211	F042899	MGVISTQNISYRIVANGQQLDVFQDEDLQISNNITELFDLGTLPSTFTRNITLPGSKVNNAFFEHMYDISILNPYLFAT
SACTD2sed_1024582	SACTD2sed_10245821	F002391	MEGYLETMAAAQGTFVVNNTTEKTANFDMLVVLEDTVFTSLKVAGNDVKSTYIADTAAAVKAGAILRPTGGVKFSGVQLTSG
SACTD2sed_1025009	SACTD2sed_10250093	F078200	MSAVYANSSNQIAALKELYTDDKDYMKDLVYKENPFLALVPKNESPDGFAGKYI
SACTD2sed_1028836	SACTD2sed_10288362	F036961	DQYFGGMPWNAIKTDRTLKAQFYRVVETEYPQYVCYPGGKLPIPVDVPYPPKRGEKRFFQGN*
SACTD2sed_1029265	SACTD2sed_10292652	F014494	MGEGSVMATKYFECTECGARGKISLKGDDHSTEDCVYCPVCSADIYEEEDLDEEE*
SACTD2sed_1032190	SACTD2sed_10321903	F067746	MANISETEARLNSHEEVCALRYEQINARLKRLEGILIKTAGVLILGMGGIVWSTIHIK*
SACTD2sed_1032408	SACTD2sed_10324081	F000684	MTLGGYTYQLGDLFTTSKTGVTGRITKFSPISNKVTRVQLQLANGQKRFAMVKTI*
SACTD2sed_1037084	SACTD2sed_10370841	F011586	SSADPDSRMVSIVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPTKDIYQIPPPSGNLNFLETGMNRIQQDTMAMIGMTTPQDVFNPEVMSAGNSGVKLQLALSPNQIIQDNTVRNSAEGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003512: Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences