| Basic Information | |
|---|---|
| Taxon OID | 3300003375 Open in IMG/M |
| Scaffold ID | JGI26470J50227_1006110 Open in IMG/M |
| Source Dataset Name | Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3285 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog Lake, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0409 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002539 | Metagenome | 550 | Y |
| F022814 | Metagenome | 212 | Y |
| F102438 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26470J50227_10061101 | F022814 | N/A | TYMYDTGEDYEHTITISSARCGHLYTTLTTIAHEAVHMSFHTLKGDKWLHHSAEFRRRCKMVAHELGFDGLEL* |
| JGI26470J50227_10061102 | F102438 | AGGAG | MFEFEKPFKQYEELVERVKEVNEFWVNSVFSSVKEFFKIK* |
| JGI26470J50227_10061109 | F002539 | GAGG | MNNDYVWTKPGTDISLRWRTQYGWIPPSETQEFRDKCKYLQELPLRNLDDGAKEMYEIVLKRAKVVRIK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |