NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_100008

Scaffold draft_100008


Overview

Basic Information
Taxon OID3300002848 Open in IMG/M
Scaffold IDdraft_100008 Open in IMG/M
Source Dataset NamePDIso5.158Aa3July202012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46443
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (85.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Tepid (25-34C) → Sediment → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-38.358926Long. (o)176.368682Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003129Metagenome / Metatranscriptome505Y
F007018Metagenome / Metatranscriptome359Y

Sequences

Protein IDFamilyRBSSequence
draft_10000825F003129AGGAMPESLSIASPPAVAEPALIPRNTARVTISILLTLLDSWAVVALGGALYRVSAHHPFWLTGIVLLFVSLFASLARTWYLALAVRPR*
draft_10000827F007018AGGAGGMRLSAGRIRSLATRYALAEAAAFPGLRTEPNGFATNRKPAPVVKHSRLRFAHQF*

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