NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig_10011

Scaffold contig_10011


Overview

Basic Information
Taxon OID3300002844 Open in IMG/M
Scaffold IDcontig_10011 Open in IMG/M
Source Dataset NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7173
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location NameUSA: Williamsburg, Virginia
CoordinatesLat. (o)37.251274Long. (o)-76.791915Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002085Metagenome / Metatranscriptome595Y
F015336Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
contig_100116F002085AGAAGMSNNITPLQNTNNIRMADFIRVTTQDALGDTVIYRLASTPSALTIPDVDPEPFDALGALVKVGDVQRDIKSTANETSITLVGINTAELGWVLSNKIKGSLIEMWHGFFDDNNELITTGGTGGLYKFFTGYVNSFNITEQWFEEARMYYGAINVTASSIQIILQNRTAGRYTNNNSWQFFTPTDTSMDRVSVIQNVNYFFGRDRDPSVYRS*
contig_100117F015336N/ARAADREYEQYLNFGTTGWANYIYYQGDMTSAEISACQYQTSTANKTIVLGSLPTMGATEYIVKTGDFLQIDRYSYIATADVQRGGGSTVNIPVHRTIMTTLASPMYAVIGQYGTTQSIGGSTFTGVTFPVILQQYPNYVLIPMTNDSFIQWNGTFKAIEAVL*
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