NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PetF_10009235

Scaffold PetF_10009235


Overview

Basic Information
Taxon OID3300002734 Open in IMG/M
Scaffold IDPetF_10009235 Open in IMG/M
Source Dataset NameMicrobial sample from Petrosia ficiformis
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6053
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Petrosia Ficiformis → Petrosia Ficiformis Microbial Communities From Milos, Greece

Source Dataset Sampling Location
Location NameMilos,Greece
CoordinatesLat. (o)36.76759Long. (o)24.51422Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004237Metagenome / Metatranscriptome447Y

Sequences

Protein IDFamilyRBSSequence
PetF_100092354F004237AGGAMIEYDIADMMDGVKNMIEASDIRAGDQVLLLADRRSDTASVEAITAGLKFMGAEPMSLVTEPISRYGRVPQAVLQAMEASDVVIWMWPVFITFTPAHRAMGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVYLSCVQGVAGALPAPVKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRMVEIMFGYHPKASIRHGIDDPMHWELISKMPWVGLGTDRKHPDFRHVDGSVMNARLYIDDRLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHDAHGSGTLW*
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