NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002734

3300002734: Microbial sample from Petrosia ficiformis



Overview

Basic Information
IMG/M Taxon OID3300002734 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111361 | Gp0094559 | Ga0046461
Sample NameMicrobial sample from Petrosia ficiformis
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size522988050
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePetrosia Ficiformis Microbial Communities From Milos, Greece
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Petrosia Ficiformis → Petrosia Ficiformis Microbial Communities From Milos, Greece

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal corpus

Location Information
LocationMilos,Greece
CoordinatesLat. (o)36.76759Long. (o)24.51422Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004237Metagenome / Metatranscriptome447Y
F011880Metagenome / Metatranscriptome286Y
F024410Metagenome / Metatranscriptome206Y
F072776Metagenome121N
F097867Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
PetF_10009235All Organisms → cellular organisms → Bacteria → Proteobacteria6053Open in IMG/M
PetF_10014075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4492Open in IMG/M
PetF_10061830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1491Open in IMG/M
PetF_10064891All Organisms → cellular organisms → Bacteria1435Open in IMG/M
PetF_10097060All Organisms → cellular organisms → Bacteria1038Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
PetF_10009235PetF_100092354F004237MIEYDIADMMDGVKNMIEASDIRAGDQVLLLADRRSDTASVEAITAGLKFMGAEPMSLVTEPISRYGRVPQAVLQAMEASDVVIWMWPVFITFTPAHRAMGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVYLSCVQGVAGALPAPVKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRMVEIMFGYHPKASIRHGIDDPMHWELISKMPWVGLGTDRKHPDFRHVDGSVMNARLYIDDRLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHDAHGSGTLW*
PetF_10014075PetF_100140755F097867MLDTGDMLWIPPGCSHRNIGDMLTTRIILYTRNPLTLSQEYSSRAERVAGAA*
PetF_10061830PetF_100618301F011880MATNEQIDAAEKRVYSQQQVGEFMTTWKDFPRPGLAAWSERKKAGLMNTARSTRYTPKFRPFDMLSVPNQSLVVLENDNHRIGAECVVGVQDSFHRYVDCDMVYFQFCGNTTVETEFGVYEMEPGEVMLVPGGISHRSIGRNDSLRYFCLNREAVDYVLDEEKYTSHQSFVMTRHNGPNWSGLEAPTGDVKGQVTEKMHFWDDGPDDLTVVERDYDSLVGVSTLKPKQQESGIRKLRAFDHFTMVLGKAGGEAGLLALMESQSMRVRTYNMQDEQFAFHRALQSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDGQDFLRLNFYSKLRWYVPIDPTRHVFNSTFTVETTVHKEADWWQTAANG*
PetF_10064891PetF_100648912F072776MYIDCDTHYFPVKFLEGISDQYPDSPRVVRKGDEVKSVLPDGTLIKNQAPKGRWDLDVRVAQADFEGFDKHVLIPENRELLY
PetF_10097060PetF_100970601F024410MYEVKNAIEEAKANPDVRHLSLWRTDLTYFWTINCEENMQDDMHYHENDDHIFMVLE
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