Scaffold MIS_10013673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MIS_10013673

Scaffold MIS_10013673

Overview

Basic Information
Taxon OID	3300002026 Open in IMG/M
Scaffold ID	MIS_10013673 Open in IMG/M
Source Dataset Name	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8608
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location
Location Name	Middle Island Sinkhole, Lake Huron Michigan, USA
Coordinates	Lat. (^o)	45.19843	Long. (^o)	-83.32721	Alt. (m)		Depth (m)	23
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F054439	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
MIS_100136733	F054439	AGG	MSHRTRGKTTIKQMAYARRIFGGQGKCKKQIALDVGYSPNTSNSVKSHIEDKPGFQMAMTALAVDSNNLALAAMYEFKQRGFKDFSNKDLVGALNAIGNAWAKFNAEPKVKEPTENSNKLRTVILQQIENQHQVVAPQTTQVVQIAPLDGALDF*
MIS_100136738	F034486	N/A	MEENEQSLKQKKIALAASEHAPVIIELMKDCMAQIPIVADTEWKTIVNAITLEVQGTMLRTMVDHLEGIRNGSLHEQK*
MIS_100136739	F022145	N/A	MDAREIKKKGYTVQIGYSKKAKEKKLMKFITKSGDSFEISAEEMSSMLIGGVNSNTLEATFVESDRINVVEVGRQIQCVLEKDFKKGEIININYTHPYPLEFALIEQAYKIAKIDMSIPAKVLTQEYIKKVKSQLKPEMTNFITKFYKSFKNLVLK*

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